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Combined in vivo and in situ genome-resolved metagenomics reveals novel symbiotic nitrogen fixing interactions between non-cyanobacterial diazotrophs and microalgae

Udita Chandola, Camille Trottier, Marinna Gaudin, Erik Manirakiza, Samuel Menicot, Isabelle Louvet, Thomas Lacour, Timothée Chaumier, Atsuko Tanaka, Samuel Chaffron, Leila Tirichine
doi: https://doi.org/10.1101/2022.08.25.505241
Udita Chandola
1Nantes Université, CNRS, US2B, UMR 6286, F-44000 Nantes, France
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Camille Trottier
1Nantes Université, CNRS, US2B, UMR 6286, F-44000 Nantes, France
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Marinna Gaudin
2Nantes Université, École Centrale Nantes, CNRS, LS2N, UMR 6004, Nantes, France
3Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, F-75016 Paris, France
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Erik Manirakiza
1Nantes Université, CNRS, US2B, UMR 6286, F-44000 Nantes, France
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Samuel Menicot
1Nantes Université, CNRS, US2B, UMR 6286, F-44000 Nantes, France
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Isabelle Louvet
4Nantes Université, CNRS, CEISAM, UMR 6230, F-44000 Nantes, France
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Thomas Lacour
5Ifremer, PHYTOX, PHYSALG, Rue de l’Ile d’Yeu, BP21105, Nantes Cedex 03, 44311, France
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Timothée Chaumier
1Nantes Université, CNRS, US2B, UMR 6286, F-44000 Nantes, France
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Atsuko Tanaka
6Department of Chemistry, Biology and Marine Science, Faculty of Science, University of the Ryukyus, Okinawa 903-0213, Japan
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Samuel Chaffron
2Nantes Université, École Centrale Nantes, CNRS, LS2N, UMR 6004, Nantes, France
3Research Federation for the Study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, F-75016 Paris, France
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Leila Tirichine
1Nantes Université, CNRS, US2B, UMR 6286, F-44000 Nantes, France
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  • For correspondence: tirichine-l@univ-nantes.fr
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Abstract

Non-cyanobacteria diazotrophs (NCDs) were shown to dominate in surface waters shifting the long-held paradigm of cyanobacteria dominance and raising fundamental questions on how these putative heterotrophic bacteria thrive in sunlit oceans. Here, we report an unprecedented finding in the widely used model diatom Phaeodactylum triconrnutum (Pt) of NCDs sustaining diatom cells in the absence of bioavailable nitrogen. We identified PtNCDs using metagenomics sequencing and detected nitrogenase gene in silico and/or by PCR. We demonstrated nitrogen fixation in PtNCDs and their close genetic affiliation with NCDs from the environment. We showed the wide occurrence of this type of symbiosis with the isolation of NCDs from other microalgae and their identification in the environment and in co-occurrence with photosynthetic microalgae. Overall, this study provides evidence for a previously overlooked symbiosis using a multidisciplinary model-based approach which will consequently help understand the different players driving global marine nitrogen fixation.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted August 25, 2022.
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Combined in vivo and in situ genome-resolved metagenomics reveals novel symbiotic nitrogen fixing interactions between non-cyanobacterial diazotrophs and microalgae
Udita Chandola, Camille Trottier, Marinna Gaudin, Erik Manirakiza, Samuel Menicot, Isabelle Louvet, Thomas Lacour, Timothée Chaumier, Atsuko Tanaka, Samuel Chaffron, Leila Tirichine
bioRxiv 2022.08.25.505241; doi: https://doi.org/10.1101/2022.08.25.505241
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Combined in vivo and in situ genome-resolved metagenomics reveals novel symbiotic nitrogen fixing interactions between non-cyanobacterial diazotrophs and microalgae
Udita Chandola, Camille Trottier, Marinna Gaudin, Erik Manirakiza, Samuel Menicot, Isabelle Louvet, Thomas Lacour, Timothée Chaumier, Atsuko Tanaka, Samuel Chaffron, Leila Tirichine
bioRxiv 2022.08.25.505241; doi: https://doi.org/10.1101/2022.08.25.505241

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