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Structural analysis of the macrocyclic inhibitor BI-4020 binding to EGFR kinase

View ORCID ProfileTyler S. Beyett, Jaimin K. Rana, Ilse K. Schaeffner, View ORCID ProfileDavid E. Heppner, Michael J. Eck
doi: https://doi.org/10.1101/2022.08.27.505540
Tyler S. Beyett
1Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA
2Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA
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  • ORCID record for Tyler S. Beyett
Jaimin K. Rana
1Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA
2Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA
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Ilse K. Schaeffner
1Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA
2Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA
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David E. Heppner
3Department of Chemistry, University at Buffalo, Buffalo, NY 14260, USA
4Department of Pharmacology and Therapeutics, Roswell Park Comprehensive Cancer Center, Buffalo, NY 14203
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Michael J. Eck
1Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA
2Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA
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  • For correspondence: michael_eck@dfci.harvard.edu
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Abstract

A novel macrocyclic inhibitor of mutant EGFR (BI-4020) has shown promise in pre-clinical studies of T790M and C797S drug-resistant non-small cell lung cancer. To better understand the molecular basis for BI-4020 selectivity and potency, we have carried out biochemical activity assays and structural analysis with X-ray crystallography. Biochemical potencies agree with previous studies indicating that BI-4020 is uniquely potent against drug-resistant L858R/T790M and L858R/T790M/C797S variants. Structures show that BI-4020 is likely rendered selective due to interactions with the kinase domain hinge region as well as T790M, akin to Osimertinib. Additionally, BI-4020 is also rendered more potent due to its constrained macrocycle geometry as well as additional H-bonds to conserved K745 and T845 residues in both active and inactive conformations. These findings taken together show how this novel macrocyclic inhibitor is both highly potent and selective for mutant EGFR in a reversible mechanism and motivate structure-inspired approaches to developing targeted therapies in medicinal oncology.

Competing Interest Statement

The Eck lab receives (or has received within the past two years) sponsored research support from Novartis, Takeda, and Springworks Therapeutics.

Footnotes

  • https://www.rcsb.org/structure/7KY0

  • https://www.rcsb.org/structure/7KXZ

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted August 27, 2022.
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Structural analysis of the macrocyclic inhibitor BI-4020 binding to EGFR kinase
Tyler S. Beyett, Jaimin K. Rana, Ilse K. Schaeffner, David E. Heppner, Michael J. Eck
bioRxiv 2022.08.27.505540; doi: https://doi.org/10.1101/2022.08.27.505540
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Structural analysis of the macrocyclic inhibitor BI-4020 binding to EGFR kinase
Tyler S. Beyett, Jaimin K. Rana, Ilse K. Schaeffner, David E. Heppner, Michael J. Eck
bioRxiv 2022.08.27.505540; doi: https://doi.org/10.1101/2022.08.27.505540

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