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The Immunological Proteome Resource

View ORCID ProfileAlejandro J. Brenes, Jens L. Hukelmann, View ORCID ProfileLaura Spinelli, View ORCID ProfileAndrew J.M. Howden, View ORCID ProfileJulia M. Marchingo, Linda V. Sinclair, Christina Rollings, View ORCID ProfileOlivia J. James, View ORCID ProfileIain R Phair, Stephen P. Matthews, Sarah H. Ross, View ORCID ProfileJ. Simon C. Arthur, View ORCID ProfileMahima Swamy, View ORCID ProfileDavid K. Finlay, View ORCID ProfileAngus I. Lamond, View ORCID ProfileDoreen A. Cantrell
doi: https://doi.org/10.1101/2022.08.29.505666
Alejandro J. Brenes
1Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, Scotland, UK
2Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dundee, Scotland, UK
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  • ORCID record for Alejandro J. Brenes
  • For correspondence: ajbrenesmurillo@dundee.ac.uk
Jens L. Hukelmann
2Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dundee, Scotland, UK
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Laura Spinelli
1Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, Scotland, UK
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  • ORCID record for Laura Spinelli
Andrew J.M. Howden
1Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, Scotland, UK
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  • ORCID record for Andrew J.M. Howden
Julia M. Marchingo
1Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, Scotland, UK
4Blood Cells and Blood Cancer Division, Walter and Eliza Hall Institute of Medical Research, Victoria, Australia
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  • ORCID record for Julia M. Marchingo
Linda V. Sinclair
1Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, Scotland, UK
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Christina Rollings
1Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, Scotland, UK
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Olivia J. James
1Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, Scotland, UK
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  • ORCID record for Olivia J. James
Iain R Phair
1Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, Scotland, UK
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Stephen P. Matthews
1Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, Scotland, UK
5MRC Protein Phosphorylation and Ubiquitylation Unit, University of Dundee, Dundee, United Kingdom
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Sarah H. Ross
6Immunology Programme, The Babraham Institute, Cambridge, United Kingdom
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J. Simon C. Arthur
1Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, Scotland, UK
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Mahima Swamy
1Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, Scotland, UK
5MRC Protein Phosphorylation and Ubiquitylation Unit, University of Dundee, Dundee, United Kingdom
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David K. Finlay
7School of Biochemistry and Immunology, Trinity Biomedical Sciences Institute, Trinity College Dublin, Dublin, Ireland
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  • ORCID record for David K. Finlay
Angus I. Lamond
2Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dundee, Scotland, UK
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Doreen A. Cantrell
1Division of Cell Signalling and Immunology, School of Life Sciences, University of Dundee, Dundee, Scotland, UK
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  • ORCID record for Doreen A. Cantrell
  • For correspondence: ajbrenesmurillo@dundee.ac.uk
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Abstract

The Immunological Proteome Resource (ImmPRes; http://immpres.co.uk/) is an open access public resource integrating proteomic data generated by large-scale mass-spectrometry analysis of murine hematopoietic populations. The initial focus is T lymphocytes and how their proteomes are shaped by immune activation, environment, and intracellular signalling pathways with an aim to expand it to B cells and innate immune cells. It is a multidisciplinary effort between immunology and mass spectrometry-based labs with the objective to help define an in-depth high-quality map of immune cell proteomes. Maintaining data reproducibility and integrity are a priority within the resource, thus there is an in-depth protocols section explaining in detail the sample processing and the mass spectrometry-based analysis. ImmPRes provides open access to proteomic datasets covering a wide range of murine leukocyte populations with analysis of copy numbers per cell of > 10,000 proteins, enabling new understanding of lymphocyte phenotypes. All data is accessible via a simple graphical interface that supports easy interrogation of the data and options to download data summaries and raw data files.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted August 29, 2022.
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The Immunological Proteome Resource
Alejandro J. Brenes, Jens L. Hukelmann, Laura Spinelli, Andrew J.M. Howden, Julia M. Marchingo, Linda V. Sinclair, Christina Rollings, Olivia J. James, Iain R Phair, Stephen P. Matthews, Sarah H. Ross, J. Simon C. Arthur, Mahima Swamy, David K. Finlay, Angus I. Lamond, Doreen A. Cantrell
bioRxiv 2022.08.29.505666; doi: https://doi.org/10.1101/2022.08.29.505666
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The Immunological Proteome Resource
Alejandro J. Brenes, Jens L. Hukelmann, Laura Spinelli, Andrew J.M. Howden, Julia M. Marchingo, Linda V. Sinclair, Christina Rollings, Olivia J. James, Iain R Phair, Stephen P. Matthews, Sarah H. Ross, J. Simon C. Arthur, Mahima Swamy, David K. Finlay, Angus I. Lamond, Doreen A. Cantrell
bioRxiv 2022.08.29.505666; doi: https://doi.org/10.1101/2022.08.29.505666

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