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Pseudokinase HPO-11 inhibits nonsense-mediated decay to ensure genome stability in C. elegans

Qian Zhao, Erika D Gromoff, Wei Yang, Jennifer Schwarz, Lena Tittel, Ekkehard Schulze, View ORCID ProfileBettina Warscheid, View ORCID ProfileRalf Baumeister, View ORCID ProfileWenjing Qi
doi: https://doi.org/10.1101/2022.09.04.506508
Qian Zhao
1Bioinformatics and Molecular Genetics, Institute of Biology III, Faculty of Biology, Albert-Ludwigs-University Freiburg, Germany
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Erika D Gromoff
1Bioinformatics and Molecular Genetics, Institute of Biology III, Faculty of Biology, Albert-Ludwigs-University Freiburg, Germany
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Wei Yang
1Bioinformatics and Molecular Genetics, Institute of Biology III, Faculty of Biology, Albert-Ludwigs-University Freiburg, Germany
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Jennifer Schwarz
2Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology, Albert-Ludwigs-University Freiburg, Germany
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Lena Tittel
1Bioinformatics and Molecular Genetics, Institute of Biology III, Faculty of Biology, Albert-Ludwigs-University Freiburg, Germany
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Ekkehard Schulze
1Bioinformatics and Molecular Genetics, Institute of Biology III, Faculty of Biology, Albert-Ludwigs-University Freiburg, Germany
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Bettina Warscheid
2Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology, Albert-Ludwigs-University Freiburg, Germany
3Signalling Research Centers BIOSS and CIBSS, Albert-Ludwigs-University Freiburg, Germany
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Ralf Baumeister
1Bioinformatics and Molecular Genetics, Institute of Biology III, Faculty of Biology, Albert-Ludwigs-University Freiburg, Germany
3Signalling Research Centers BIOSS and CIBSS, Albert-Ludwigs-University Freiburg, Germany
4Center for Biochemistry and Molecular Cell Research, Faculty of Medicine, Albert-Ludwigs-University Freiburg, Germany
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  • For correspondence: wenjing.qi@biologie.uni-freiburg.de baumeister@celegans.de
Wenjing Qi
1Bioinformatics and Molecular Genetics, Institute of Biology III, Faculty of Biology, Albert-Ludwigs-University Freiburg, Germany
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  • ORCID record for Wenjing Qi
  • For correspondence: wenjing.qi@biologie.uni-freiburg.de baumeister@celegans.de
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Abstract

DNA double-strand breaks (DSBs) are highly toxic DNA lesions that can induce mutations and chromosome rearrangement therefore causing genome instability (GIN). In response to DSBs, cells activate the DNA damage response by hierarchical assembly of signaling and repair mechanisms. This involves recruitment of the repair factors at DSB sites, local chromatin remodeling, cell cycle arrest and, eventually, DNA repair or apoptosis. Studies investigating mechanisms ensuring genome stability have so far mostly focused on DNA-protein interactions and signal transduction in response to DNA damage. Emerging evidence in the last decade suggests that post-transcriptional control of gene expression by RNA-binding proteins also participates in maintaining genome integrity. However, how specific control of RNA fate mechanistically affects genome stability is still poorly understood. Here, we report that the pseudokinase HPO-11 ensures genome integrity in C. elegans. Loss of hpo-11 leads to accumulation of R-loops, increased DSBs and germline apoptosis, as well as an elevated mutation rate in the somatic cells. In addition, inhibition of nonsense mediated decay (NMD) reduces DSBs and germline apoptosis in the absence of hpo-11. We find that HPO-11 physically interacts with SMG-2, the core factor of NMD, and prevents degradation of specific transcripts by NMD, thus contributing to maintenance of genome stability. Furthermore, knock-down of hpo-11 human homologs NRBP1/2 also results in increased DNA DSBs, and NRBP1/2 physically interact with the human SMG-2 orthologue UPF1. In summary, our work identifies an evolutionarily conserved role of HPO-11 to protect genome stability via suppressing abnormal mRNA decay by NMD.

Competing Interest Statement

The authors have declared no competing interest.

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Posted September 04, 2022.
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Pseudokinase HPO-11 inhibits nonsense-mediated decay to ensure genome stability in C. elegans
Qian Zhao, Erika D Gromoff, Wei Yang, Jennifer Schwarz, Lena Tittel, Ekkehard Schulze, Bettina Warscheid, Ralf Baumeister, Wenjing Qi
bioRxiv 2022.09.04.506508; doi: https://doi.org/10.1101/2022.09.04.506508
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Pseudokinase HPO-11 inhibits nonsense-mediated decay to ensure genome stability in C. elegans
Qian Zhao, Erika D Gromoff, Wei Yang, Jennifer Schwarz, Lena Tittel, Ekkehard Schulze, Bettina Warscheid, Ralf Baumeister, Wenjing Qi
bioRxiv 2022.09.04.506508; doi: https://doi.org/10.1101/2022.09.04.506508

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