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Mapping the glial transcriptome in Huntington’s disease using snRNAseq: Selective disruption of glial signatures across brain regions

View ORCID ProfileSunniva M. K. Bøstrand, View ORCID ProfileLuise A. Seeker, View ORCID ProfileNina-Lydia Kazakou, Nadine Bestard-Cuche, View ORCID ProfileSarah Jäkel, View ORCID ProfileBoyd Kenkhuis, Neil C. Henderson, View ORCID ProfileSusanne T. de Bot, View ORCID ProfileWilleke van Roon-Mom, View ORCID ProfileJosef Priller, View ORCID ProfileAnna Williams
doi: https://doi.org/10.1101/2022.09.10.507291
Sunniva M. K. Bøstrand
1University of Edinburgh, Centre for Regenerative Medicine, Institute of Regeneration and Repair, Edinburgh, United Kingdom
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  • ORCID record for Sunniva M. K. Bøstrand
Luise A. Seeker
1University of Edinburgh, Centre for Regenerative Medicine, Institute of Regeneration and Repair, Edinburgh, United Kingdom
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Nina-Lydia Kazakou
1University of Edinburgh, Centre for Regenerative Medicine, Institute of Regeneration and Repair, Edinburgh, United Kingdom
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Nadine Bestard-Cuche
1University of Edinburgh, Centre for Regenerative Medicine, Institute of Regeneration and Repair, Edinburgh, United Kingdom
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Sarah Jäkel
2Ludwig-Maximilians-Universität, Institute for Stroke and Dementia Research, Munich, Germany
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Boyd Kenkhuis
3University of Leiden Medical Center, Department of Human Genetics, Leiden, Netherlands
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Neil C. Henderson
4University of Edinburgh, Centre for Inflammation Research, Edinburgh, United Kingdom
5University of Edinburgh,MRC Human Genetics Unit, Institute of Genetics and Cancer, Edinburgh, UK
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Susanne T. de Bot
6University of Leiden Medical Center, Department of Neurology, Leiden, Netherlands
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Willeke van Roon-Mom
3University of Leiden Medical Center, Department of Human Genetics, Leiden, Netherlands
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Josef Priller
7University of Edinburgh, CCBS and UK Dementia Research Institute, Edinburgh, United Kingdom
8TU Munich, Department of Psychiatry and Psychotherapy, School of Medicine, Munich, Germany
9Charité Universitätsmedizin Berlin, DZNE, Neuropsychiatry, Berlin, Germany
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  • For correspondence: anna.williams@ed.ac.uk josef.priller@ed.ac.uk
Anna Williams
1University of Edinburgh, Centre for Regenerative Medicine, Institute of Regeneration and Repair, Edinburgh, United Kingdom
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  • For correspondence: anna.williams@ed.ac.uk josef.priller@ed.ac.uk
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ABSTRACT

Huntington’s disease (HD) is a severely debilitating, autosomal dominant neurodegenerative disease with a fatal outcome. There is accumulating evidence of a prominent role of glia in the pathology of HD, and we investigated this by conducting single nuclear RNA sequencing (snRNAseq) of human post mortem brain in four differentially affected regions; caudate nucleus, frontal cortex, hippocampus and cerebellum. Across 127,205 nuclei from people with HD, and age/sex matched controls, we found heterogeneity of glia which is altered in HD. We describe prominent changes in the abundance of certain subtypes of astrocytes, microglia, oligodendrocyte precursor cells and oligodendrocytes between HD and control samples, and these differences are widespread across brain regions. Furthermore, we highlight two possible mechanisms that characterise the glial contribution to disease pathology. Firstly, we show that upregulation of molecular chaperones represents a cross-glial signature in HD, which likely reflects an adaptive response to the accumulation of mutant Huntingtin (mHTT). Secondly, we show an oligodendrocyte-specific upregulation of the calmodulin-dependent 3’,5’-cyclic nucleotide phosphodiesterase 1A (PDE1A) in HD brain compared to controls, which may cause dysfunction of key cellular functions due to the downregulation of the important second messengers cyclic adenosine monophosphate (cAMP) and cyclic guanosine monophosphate (cGMP). Our results support the hypothesis that glia have an important role in the pathology of HD, and show that all types of glia are affected in the disease. As glia are more tractable to treat than neurons, our findings may be of therapeutic relevance.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Mapping the glial transcriptome in Huntington’s disease using snRNAseq: Selective disruption of glial signatures across brain regions
Sunniva M. K. Bøstrand, Luise A. Seeker, Nina-Lydia Kazakou, Nadine Bestard-Cuche, Sarah Jäkel, Boyd Kenkhuis, Neil C. Henderson, Susanne T. de Bot, Willeke van Roon-Mom, Josef Priller, Anna Williams
bioRxiv 2022.09.10.507291; doi: https://doi.org/10.1101/2022.09.10.507291
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Mapping the glial transcriptome in Huntington’s disease using snRNAseq: Selective disruption of glial signatures across brain regions
Sunniva M. K. Bøstrand, Luise A. Seeker, Nina-Lydia Kazakou, Nadine Bestard-Cuche, Sarah Jäkel, Boyd Kenkhuis, Neil C. Henderson, Susanne T. de Bot, Willeke van Roon-Mom, Josef Priller, Anna Williams
bioRxiv 2022.09.10.507291; doi: https://doi.org/10.1101/2022.09.10.507291

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