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Revisiting the bad luck hypothesis: Cancer risk and aging are linked to replication-driven changes to the epigenome

Christopher J. Minteer, Kyra Thrush, Peter Niimi, Joel Rozowsky, Jason Liu, Mor Frank, Thomas McCabe, Erin Hofstatter, Mariya Rozenblit, Lajos Pusztai, Kenneth Beckman, Mark Gerstein, Morgan E. Levine
doi: https://doi.org/10.1101/2022.09.14.507975
Christopher J. Minteer
1Department of Pathology, Yale School of Medicine, New Haven, Connecticut, USA
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Kyra Thrush
1Department of Pathology, Yale School of Medicine, New Haven, Connecticut, USA
2San Diego Institute of Science, Altos Labs, San Diego, California, USA
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Peter Niimi
1Department of Pathology, Yale School of Medicine, New Haven, Connecticut, USA
2San Diego Institute of Science, Altos Labs, San Diego, California, USA
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Joel Rozowsky
3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA
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Jason Liu
3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA
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Mor Frank
3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA
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Thomas McCabe
1Department of Pathology, Yale School of Medicine, New Haven, Connecticut, USA
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Erin Hofstatter
4Department of Internal Medicine, Section of Medical Oncology, Yale School of Medicine, New Haven, Connecticut, USA
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Mariya Rozenblit
4Department of Internal Medicine, Section of Medical Oncology, Yale School of Medicine, New Haven, Connecticut, USA
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Lajos Pusztai
4Department of Internal Medicine, Section of Medical Oncology, Yale School of Medicine, New Haven, Connecticut, USA
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Kenneth Beckman
5Biomedical Genomics Center, University of Minnesota, Minneapolis, Minnesota, USA
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Mark Gerstein
3Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA
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Morgan E. Levine
1Department of Pathology, Yale School of Medicine, New Haven, Connecticut, USA
2San Diego Institute of Science, Altos Labs, San Diego, California, USA
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  • For correspondence: mlevine@altoslabs.com
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Abstract

Aging is the leading risk factor for cancer. While it’s been proposed that the age-related accumulation of somatic mutations drives this relationship, it is likely not the full story. Here, we show that both aging and cancer share a common epigenetic replication signature, which we modeled from DNA methylation data in extensively passaged immortalized human cells in vitro and tested on clinical tissues. This epigenetic signature of replication – termed CellDRIFT – increased with age across multiple tissues, distinguished tumor from normal tissue, and was escalated in normal breast tissue from cancer patients. Additionally, within-person tissue differences were correlated with both predicted lifetime tissue-specific stem cell divisions and tissue-specific cancer risk. Overall, our findings suggest that age-related replication drives epigenetic changes in cells, pushing them towards a more tumorigenic state.

One sentence summary Cellular replication leaves an epigenetic fingerprint that may partially underly the age-associated increase in cancer risk.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵† Data and experimental requests: Email: christopher.minteer{at}yale.edu

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted September 17, 2022.
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Revisiting the bad luck hypothesis: Cancer risk and aging are linked to replication-driven changes to the epigenome
Christopher J. Minteer, Kyra Thrush, Peter Niimi, Joel Rozowsky, Jason Liu, Mor Frank, Thomas McCabe, Erin Hofstatter, Mariya Rozenblit, Lajos Pusztai, Kenneth Beckman, Mark Gerstein, Morgan E. Levine
bioRxiv 2022.09.14.507975; doi: https://doi.org/10.1101/2022.09.14.507975
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Revisiting the bad luck hypothesis: Cancer risk and aging are linked to replication-driven changes to the epigenome
Christopher J. Minteer, Kyra Thrush, Peter Niimi, Joel Rozowsky, Jason Liu, Mor Frank, Thomas McCabe, Erin Hofstatter, Mariya Rozenblit, Lajos Pusztai, Kenneth Beckman, Mark Gerstein, Morgan E. Levine
bioRxiv 2022.09.14.507975; doi: https://doi.org/10.1101/2022.09.14.507975

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