Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

A natural language fMRI dataset for voxelwise encoding models

View ORCID ProfileAmanda LeBel, Lauren Wagner, Shailee Jain, Aneesh Adhikari-Desai, Bhavin Gupta, Allyson Morgenthal, Jerry Tang, Lixiang Xu, Alexander G. Huth
doi: https://doi.org/10.1101/2022.09.22.509104
Amanda LeBel
1Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA 94704, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Amanda LeBel
Lauren Wagner
4Department of Psychiatry and Biobehavioral Sciences; University of California, Los Angeles, CA 90095, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Shailee Jain
2Department of Computer Science; The University of Texas at Austin, Austin, TX 78712, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Aneesh Adhikari-Desai
5Department of Neuroscience, The University of Texas at Austin, Austin, TX 78712, USA
2Department of Computer Science; The University of Texas at Austin, Austin, TX 78712, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Bhavin Gupta
2Department of Computer Science; The University of Texas at Austin, Austin, TX 78712, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Allyson Morgenthal
5Department of Neuroscience, The University of Texas at Austin, Austin, TX 78712, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Jerry Tang
2Department of Computer Science; The University of Texas at Austin, Austin, TX 78712, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Lixiang Xu
3Department of Physics; The University of Texas at Austin, Austin, TX 78712, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Alexander G. Huth
5Department of Neuroscience, The University of Texas at Austin, Austin, TX 78712, USA
2Department of Computer Science; The University of Texas at Austin, Austin, TX 78712, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: huth@cs.utexas.edu
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Data/Code
  • Preview PDF
Loading

Abstract

Speech comprehension is a complex process that draws on humans’ abilities to extract lexical information, parse syntax, and form semantic understanding. These sub-processes have traditionally been studied using separate neuroimaging experiments that attempt to isolate specific effects of interest. More recently it has become possible to study all stages of language comprehension in a single neuroimaging experiment using narrative natural language stimuli. The resulting data are richly varied at every level, enabling analyses that can probe everything from spectral representations to high-level representations of semantic meaning. We provide a dataset containing BOLD fMRI responses recorded while 8 subjects each listened to 27 complete, natural, narrative stories (~6 hours). This dataset includes pre-processed and raw MRIs, as well as hand-constructed 3D cortical surfaces for each participant. To address the challenges of analyzing naturalistic data, this dataset is accompanied by a python library containing basic code for creating voxelwise encoding models. Altogether, this dataset provides a large and novel resource for understanding speech and language processing in the human brain.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • This work was supported by the Whitehall Foundation, Alfred P. Sloan Foundation, Burroughs-Wellcome Fund, and the Texas Advanced Computing Center (TACC). The Authors Declare no conflict of interest.

  • https://openneuro.org/datasets/ds003020

  • https://github.com/HuthLab/deep-fMRI-dataset

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Back to top
PreviousNext
Posted September 23, 2022.
Download PDF
Data/Code
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
A natural language fMRI dataset for voxelwise encoding models
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
A natural language fMRI dataset for voxelwise encoding models
Amanda LeBel, Lauren Wagner, Shailee Jain, Aneesh Adhikari-Desai, Bhavin Gupta, Allyson Morgenthal, Jerry Tang, Lixiang Xu, Alexander G. Huth
bioRxiv 2022.09.22.509104; doi: https://doi.org/10.1101/2022.09.22.509104
Reddit logo Twitter logo Facebook logo LinkedIn logo Mendeley logo
Citation Tools
A natural language fMRI dataset for voxelwise encoding models
Amanda LeBel, Lauren Wagner, Shailee Jain, Aneesh Adhikari-Desai, Bhavin Gupta, Allyson Morgenthal, Jerry Tang, Lixiang Xu, Alexander G. Huth
bioRxiv 2022.09.22.509104; doi: https://doi.org/10.1101/2022.09.22.509104

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Neuroscience
Subject Areas
All Articles
  • Animal Behavior and Cognition (4841)
  • Biochemistry (10768)
  • Bioengineering (8026)
  • Bioinformatics (27237)
  • Biophysics (13950)
  • Cancer Biology (11101)
  • Cell Biology (16021)
  • Clinical Trials (138)
  • Developmental Biology (8764)
  • Ecology (13261)
  • Epidemiology (2067)
  • Evolutionary Biology (17334)
  • Genetics (11673)
  • Genomics (15899)
  • Immunology (11009)
  • Microbiology (26024)
  • Molecular Biology (10620)
  • Neuroscience (56430)
  • Paleontology (417)
  • Pathology (1729)
  • Pharmacology and Toxicology (2999)
  • Physiology (4538)
  • Plant Biology (9613)
  • Scientific Communication and Education (1612)
  • Synthetic Biology (2677)
  • Systems Biology (6965)
  • Zoology (1508)