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Location of CD39+ T cell sub-populations within tumours predict differential outcomes in non-small cell lung cancer

View ORCID ProfileLilian Koppensteiner, View ORCID ProfileLayla Mathieson, View ORCID ProfileSamuel Pattle, View ORCID ProfileDavid A Dorward, View ORCID ProfileRichard O’Connor, View ORCID ProfileAhsan Akram
doi: https://doi.org/10.1101/2022.09.29.509921
Lilian Koppensteiner
1Centre for Inflammation Research, Queen’s Medical Research Institute, University of Edinburgh, 47 Little France Crescent, Edinburgh BioQuarter, Edinburgh, United Kingdom, EH16 4TJ
2Translational Healthcare Technologies Group, Centre for Inflammation Research, Queen’s Medical Research Institute, University of Edinburgh, 47 Little France Crescent, Edinburgh BioQuarter, Edinburgh, United Kingdom, EH16 4TJ
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  • For correspondence: l.koppensteiner@sms.ed.ac.uk ahsan.akram@ed.ac.uk
Layla Mathieson
1Centre for Inflammation Research, Queen’s Medical Research Institute, University of Edinburgh, 47 Little France Crescent, Edinburgh BioQuarter, Edinburgh, United Kingdom, EH16 4TJ
2Translational Healthcare Technologies Group, Centre for Inflammation Research, Queen’s Medical Research Institute, University of Edinburgh, 47 Little France Crescent, Edinburgh BioQuarter, Edinburgh, United Kingdom, EH16 4TJ
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Samuel Pattle
3Department of Pathology, Royal Infirmary of Edinburgh, Edinburgh, United Kingdom
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David A Dorward
1Centre for Inflammation Research, Queen’s Medical Research Institute, University of Edinburgh, 47 Little France Crescent, Edinburgh BioQuarter, Edinburgh, United Kingdom, EH16 4TJ
3Department of Pathology, Royal Infirmary of Edinburgh, Edinburgh, United Kingdom
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Richard O’Connor
1Centre for Inflammation Research, Queen’s Medical Research Institute, University of Edinburgh, 47 Little France Crescent, Edinburgh BioQuarter, Edinburgh, United Kingdom, EH16 4TJ
2Translational Healthcare Technologies Group, Centre for Inflammation Research, Queen’s Medical Research Institute, University of Edinburgh, 47 Little France Crescent, Edinburgh BioQuarter, Edinburgh, United Kingdom, EH16 4TJ
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Ahsan Akram
1Centre for Inflammation Research, Queen’s Medical Research Institute, University of Edinburgh, 47 Little France Crescent, Edinburgh BioQuarter, Edinburgh, United Kingdom, EH16 4TJ
2Translational Healthcare Technologies Group, Centre for Inflammation Research, Queen’s Medical Research Institute, University of Edinburgh, 47 Little France Crescent, Edinburgh BioQuarter, Edinburgh, United Kingdom, EH16 4TJ
4Cancer Research UK Edinburgh Centre, Institute of Genetics & Molecular Medicine, The University of Edinburgh, Crewe Road South, Edinburgh, United Kingdom, EH4 2XR
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  • ORCID record for Ahsan Akram
  • For correspondence: l.koppensteiner@sms.ed.ac.uk ahsan.akram@ed.ac.uk
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Abstract

An improved mechanistic understanding of immunosuppressive pathways in NSCLC is important to develop novel diagnostic and therapeutic approaches. Here, we reveal that the prognostic significance of the rate limiting ectonucleotidases in adenosine production CD39 and CD73 requires knowledge of cell type specific expression and localisation within tumours. In a cohort of early treatment naïve NSCLC patients, high stromal expression of CD39 and CD73 predicts poor outcome. CD39 expression amongst T cells identifies CD39+CD4+ Tregs which predict poor outcome and CD39+CD103+ CTL which confer a survival benefit if high densities are observed inside of the tumour nest. Bulk RNA Seq shows that the TME of NSCLC upregulates regulatory pathways in CD4+ T cells and exhaustion in CD8+ T cells. Analysis of single-cell RNASeq datasets illustrates that CD39+CD4+ Tregs are enriched in Treg signature gene sets, and CD39+CD103+ CTL show gene signatures indicative of an exhausted cytotoxic phenotype with an upregulated expression of CXCL13.

Combined knowledge of patterns of distribution and location are required to understand the prognostic impact of CD39+ T cell populations in NSCLC. This study provides an improved understanding of the spatial and functional characteristics of CD39+ T cells and illustrates their significance to patient outcome.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted September 30, 2022.
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Location of CD39+ T cell sub-populations within tumours predict differential outcomes in non-small cell lung cancer
Lilian Koppensteiner, Layla Mathieson, Samuel Pattle, David A Dorward, Richard O’Connor, Ahsan Akram
bioRxiv 2022.09.29.509921; doi: https://doi.org/10.1101/2022.09.29.509921
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Location of CD39+ T cell sub-populations within tumours predict differential outcomes in non-small cell lung cancer
Lilian Koppensteiner, Layla Mathieson, Samuel Pattle, David A Dorward, Richard O’Connor, Ahsan Akram
bioRxiv 2022.09.29.509921; doi: https://doi.org/10.1101/2022.09.29.509921

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