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Capsid structure of a metazoan fungal dsRNA megabirnavirus reveals its uniquely acquired structures

View ORCID ProfileHan Wang, Lakha Salaipeth, View ORCID ProfileNaoyuki Miyazaki, View ORCID ProfileNobuhiro Suzuki, View ORCID ProfileKenta Okamoto
doi: https://doi.org/10.1101/2022.09.29.510062
Han Wang
1The Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden
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Lakha Salaipeth
2Institute of Plant Science and Resources, Okayama University, Kurashiki, Okayama 710-0046, Japan
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Naoyuki Miyazaki
3Life Science Center of Survival Dynamics, Tsukuba Advanced Research Alliance, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8777, Japan
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  • For correspondence: kenta.okamoto@icm.uu.se nsuzuki@okayama-u.ac.jp naomiyazaki@gmail.com
Nobuhiro Suzuki
2Institute of Plant Science and Resources, Okayama University, Kurashiki, Okayama 710-0046, Japan
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  • For correspondence: kenta.okamoto@icm.uu.se nsuzuki@okayama-u.ac.jp naomiyazaki@gmail.com
Kenta Okamoto
1The Laboratory of Molecular Biophysics, Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden
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  • For correspondence: kenta.okamoto@icm.uu.se nsuzuki@okayama-u.ac.jp naomiyazaki@gmail.com
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ABSTRACT

Rosellinia necatrix megabirnavirus 1-W779 (RnMBV1) is a non-enveloped icosahedral double-stranded (ds)RNA virus that infects the ascomycete fungus Rosellinia. necatrix, a causative agent that induces a lethal plant disease white root rot. Herein, we have first resolved the atomic structure of the RnMBV1 capsid at 3.2 Å resolution using cryo-electron microscopy (cryo-EM) single-particle analysis. Contrary to the other structurally associated viral capsid proteins, the RnMBV1 capsid protein structure exhibits an extra-long C-terminal arm and a surface protrusion domain. In addition, the previously unrecognized crown proteins are identified in a symmetry-expanded cryo-EM model and are present over the 3-fold axes. These exclusive structural features of the RnMBV1 capsid could have been acquired for playing essential roles in transmission, genome packaging, and/or particle assembly of the megabirnaviruses. Our findings, therefore, will reinforce the understanding of how the structural and molecular machineries of the megabirnaviruses influence the virulence of the disease-related ascomycete fungus.

Author summary A fungal plant soil-borne pathogen, Rosellinia necatrix, which can cause devastating disease white root rot in many highly valued fruit trees, is difficult to be controlled with conventional approaches such as fungicide applications. Rosellinia necatrix megabirnavirus 1-W779 (RnMBV1) is a dsRNA virus isolated from the R. necatrix field strain, W779, and this virus can be a viro-control candidate to confer hypovirulence in its host R. necatrix. To make use of RnMBV1 in the white root rot disease control, more molecular and structural investigations will offer us more insights. Here, we have performed cryo-electron microscopy (cryo-EM) single-particle analysis, to obtain the first atomic models of RnMBV1 particles. Based on the atomic structures, we found unique both surface and interior features. In addition, we found a previously unexpected protein on the viral surface. These aforementioned structural features might play important roles in the viral life cycles, and will enable us to apply this fungal virus as a viro-control approach.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵a Present address: School of Bioresources and Technology, King Mongkut’s University of Technology Thonburi, Bangkok 10140, Thailand.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted September 30, 2022.
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Capsid structure of a metazoan fungal dsRNA megabirnavirus reveals its uniquely acquired structures
Han Wang, Lakha Salaipeth, Naoyuki Miyazaki, Nobuhiro Suzuki, Kenta Okamoto
bioRxiv 2022.09.29.510062; doi: https://doi.org/10.1101/2022.09.29.510062
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Capsid structure of a metazoan fungal dsRNA megabirnavirus reveals its uniquely acquired structures
Han Wang, Lakha Salaipeth, Naoyuki Miyazaki, Nobuhiro Suzuki, Kenta Okamoto
bioRxiv 2022.09.29.510062; doi: https://doi.org/10.1101/2022.09.29.510062

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