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Carm1 regulates the speed of C/EBPα-induced transdifferentiation by a cofactor stealing mechanism

Guillem Torcal Garcia, Elisabeth Kowenz-Leutz, Tian V. Tian, Antonios Klonizakis, Jonathan Lerner, Luisa de Andrés-Aguayo, Clara Berenguer, Marcos Plana-Carmona, Maria Vila-Casadesús, Romain Bulteau, View ORCID ProfileMirko Francesconi, Sandra Peiró, Kenneth S. Zaret, View ORCID ProfileAchim Leutz, View ORCID ProfileThomas Graf
doi: https://doi.org/10.1101/2022.10.03.510647
Guillem Torcal Garcia
1Gene Regulation, Stem Cells and Cancer Program, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain
2Universitat Pompeu Fabra (UPF), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain.
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Elisabeth Kowenz-Leutz
3Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Robert-Rössle-Strasse 10, 13125 Berlin, Germany.
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Tian V. Tian
1Gene Regulation, Stem Cells and Cancer Program, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain
2Universitat Pompeu Fabra (UPF), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain.
4Vall d’Hebron Institute of Oncology (VHIO), Carrer de Natzaret 115-117, 08035 Barcelona, Spain.
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Antonios Klonizakis
1Gene Regulation, Stem Cells and Cancer Program, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain
2Universitat Pompeu Fabra (UPF), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain.
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Jonathan Lerner
5Institute for Regenerative Medicine and Department of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania, 3400 Civic Center Blvd, PA 19104 Philadelphia, USA.
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Luisa de Andrés-Aguayo
1Gene Regulation, Stem Cells and Cancer Program, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain
2Universitat Pompeu Fabra (UPF), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain.
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Clara Berenguer
1Gene Regulation, Stem Cells and Cancer Program, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain
2Universitat Pompeu Fabra (UPF), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain.
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Marcos Plana-Carmona
1Gene Regulation, Stem Cells and Cancer Program, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain
2Universitat Pompeu Fabra (UPF), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain.
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Maria Vila-Casadesús
1Gene Regulation, Stem Cells and Cancer Program, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain
2Universitat Pompeu Fabra (UPF), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain.
4Vall d’Hebron Institute of Oncology (VHIO), Carrer de Natzaret 115-117, 08035 Barcelona, Spain.
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Romain Bulteau
6Laboratorie de Biologie et Modélisation de la Cellule, Université de Lyon, ENS, UCBL, CNRS, INSERM, UMR5239, U 1210, F-69364 Lyon, France.
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Mirko Francesconi
6Laboratorie de Biologie et Modélisation de la Cellule, Université de Lyon, ENS, UCBL, CNRS, INSERM, UMR5239, U 1210, F-69364 Lyon, France.
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Sandra Peiró
4Vall d’Hebron Institute of Oncology (VHIO), Carrer de Natzaret 115-117, 08035 Barcelona, Spain.
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Kenneth S. Zaret
5Institute for Regenerative Medicine and Department of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania, 3400 Civic Center Blvd, PA 19104 Philadelphia, USA.
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Achim Leutz
3Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Robert-Rössle-Strasse 10, 13125 Berlin, Germany.
7Institute of Biology, Humboldt University of Berlin, Invalidenstrasse 42, 10115 Berlin, Germany.
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  • For correspondence: thomas.graf@crg.eu aleutz@mdc-berlin.de
Thomas Graf
1Gene Regulation, Stem Cells and Cancer Program, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain
2Universitat Pompeu Fabra (UPF), Carrer del Doctor Aiguader 88, 08003 Barcelona, Spain.
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  • For correspondence: thomas.graf@crg.eu aleutz@mdc-berlin.de
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ABSTRACT

Cell fate decisions are driven by lineage-restricted transcription factors but how they are regulated is incompletely understood. The C/EBPα-induced B cell to macrophage transdifferentiation (BMT) is a powerful system to address this question. Here we describe that C/EBPα with a single arginine mutation (C/EBPαR35A) induces a dramatically accelerated BMT in mouse and human cells. Changes in the expression of lineage-restricted genes occur as early as within 1 hour compared to 18 hours with the wild type. Mechanistically C/EBPαR35A exhibits an increased affinity for PU.1, a bi-lineage transcription factor required for C/EBPα-induced BMT. The complex induces more rapid chromatin accessibility changes and an enhanced relocation (stealing) of PU.1 from B cell to myeloid gene regulatory elements. Arginine 35 is methylated by Carm1 and inhibition of the enzyme accelerates BMT, similar to the mutant. Our data suggest that the relative proportions of methylated and unmethylated C/EBPα in a bipotent progenitor can determine the velocity of cell fate choice and lineage directionality.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Cell fate decisions are driven by lineage-restricted transcription factors but how they are regulated is incompletely understood. The C/EBPα-induced B cell to macrophage transdifferentiation (BMT) is a powerful system to address this question. Here we describe that C/EBPα with a single arginine mutation (C/EBPαR35A) induces a dramatically accelerated BMT in mouse and human cells. Changes in the expression of lineage-restricted genes occur as early as within 1 hour compared to 18 hours with the wild type. Mechanistically C/EBPαR35A exhibits an increased affinity for PU.1, a bi-lineage transcription factor required for C/EBPα-induced BMT. The complex induces more rapid chromatin accessibility changes and an enhanced relocation (stealing) of PU.1 from B cell to myeloid gene regulatory elements. Arginine 35 is methylated by Carm1 and inhibition of the enzyme accelerates BMT, similar to the mutant. Our data suggest that the relative proportions of methylated and unmethylated C/EBPα in a bipotent progenitor can determine the velocity of cell fate choice and lineage directionality.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted October 09, 2022.
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Carm1 regulates the speed of C/EBPα-induced transdifferentiation by a cofactor stealing mechanism
Guillem Torcal Garcia, Elisabeth Kowenz-Leutz, Tian V. Tian, Antonios Klonizakis, Jonathan Lerner, Luisa de Andrés-Aguayo, Clara Berenguer, Marcos Plana-Carmona, Maria Vila-Casadesús, Romain Bulteau, Mirko Francesconi, Sandra Peiró, Kenneth S. Zaret, Achim Leutz, Thomas Graf
bioRxiv 2022.10.03.510647; doi: https://doi.org/10.1101/2022.10.03.510647
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Carm1 regulates the speed of C/EBPα-induced transdifferentiation by a cofactor stealing mechanism
Guillem Torcal Garcia, Elisabeth Kowenz-Leutz, Tian V. Tian, Antonios Klonizakis, Jonathan Lerner, Luisa de Andrés-Aguayo, Clara Berenguer, Marcos Plana-Carmona, Maria Vila-Casadesús, Romain Bulteau, Mirko Francesconi, Sandra Peiró, Kenneth S. Zaret, Achim Leutz, Thomas Graf
bioRxiv 2022.10.03.510647; doi: https://doi.org/10.1101/2022.10.03.510647

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