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Epigenetics of post-operative delirium: A genome-wide DNA methylation study of neurosurgery patients

View ORCID ProfileTakehiko Yamanashi, Kaitlyn J. Crutchley, Nadia E. Wahba, Takaaki Nagao, Pedro S. Marra, Cade C. Akers, Eleanor J. Sullivan, Masaaki Iwata, Mathew A Howard III, Hyunkeun R. Cho, Hiroto Kawasaki, Christopher G. Hughes, Pratik P. Pandharipande, Marco M. Hefti, View ORCID ProfileGen Shinozaki
doi: https://doi.org/10.1101/2022.10.04.510706
Takehiko Yamanashi
1Stanford University School of Medicine, Department of Psychiatry and Behavioral Sciences, Palo Alto, CA, USA
2University of Iowa Carver College of Medicine, Department of Psychiatry, Iowa City, IA, USA
3Tottori University Faculty of Medicine, Department of Neuropsychiatry, Yonago-shi, Tottori, Japan
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  • ORCID record for Takehiko Yamanashi
Kaitlyn J. Crutchley
2University of Iowa Carver College of Medicine, Department of Psychiatry, Iowa City, IA, USA
4University of Nebraska Medical Center, Omaha, Nebraska, USA
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Nadia E. Wahba
2University of Iowa Carver College of Medicine, Department of Psychiatry, Iowa City, IA, USA
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Takaaki Nagao
5University of Iowa Carver College of Medicine, Department of Neurosurgery, Iowa City, IA, USA
6Toho University School of Medicine Faculty of Medicine, Department of Neurosurgery (Sakura), Sakura-shi, Chiba, Japan
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Pedro S. Marra
2University of Iowa Carver College of Medicine, Department of Psychiatry, Iowa City, IA, USA
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Cade C. Akers
2University of Iowa Carver College of Medicine, Department of Psychiatry, Iowa City, IA, USA
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Eleanor J. Sullivan
2University of Iowa Carver College of Medicine, Department of Psychiatry, Iowa City, IA, USA
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Masaaki Iwata
3Tottori University Faculty of Medicine, Department of Neuropsychiatry, Yonago-shi, Tottori, Japan
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Mathew A Howard III
5University of Iowa Carver College of Medicine, Department of Neurosurgery, Iowa City, IA, USA
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Hyunkeun R. Cho
7University of Iowa, College of Public Health, Iowa City, IA, USA
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Hiroto Kawasaki
5University of Iowa Carver College of Medicine, Department of Neurosurgery, Iowa City, IA, USA
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Christopher G. Hughes
8Vanderbilt University Medical Center, Department of Anesthesiology, Nashville, TN, USA
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Pratik P. Pandharipande
8Vanderbilt University Medical Center, Department of Anesthesiology, Nashville, TN, USA
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Marco M. Hefti
9University of Iowa Carver College of Medicine, Department of Pathology, Iowa City, IA, USA
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Gen Shinozaki
1Stanford University School of Medicine, Department of Psychiatry and Behavioral Sciences, Palo Alto, CA, USA
2University of Iowa Carver College of Medicine, Department of Psychiatry, Iowa City, IA, USA
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  • For correspondence: gens@stanford.edu
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Abstract

Aims There is no previous study demonstrating the differences of genome-wide DNA methylation (DNAm) profiles between patients with and without postoperative delirium (POD). We aimed to discover epigenetic (DNAm) markers that are associated with POD in blood obtained from patients before and after neurosurgery.

Methods Pre- and post-surgical blood DNA samples from 37 patients, including 10 POD cases, were analyzed using the Illumina EPIC array genome-wide platform. We examined DNAm differences in blood from patients with and without POD. Enrichment analysis with Gene Ontology and Kyoto Encyclopedia of Genes and Genomes terms were also conducted.

Results When POD cases were tested for DNAm change before and after surgery, enrichment analyses showed many relevant signals with statistical significance in immune response related-pathways and inflammatory cytokine related-pathways such as “cellular response to cytokine stimulus”, “regulation of immune system process”, “regulation of cell activation”, and “regulation of cytokine production”. Furthermore, after excluding the potential effect of common factors related to surgery and anesthesia between POD cases and non-POD controls, the enrichment analyses showed significant signals such as “immune response” and “T cell activation”, which are same pathways previously identified from an independent non-surgical inpatient cohort. Conclusions: Our first genome-wide DNAm investigation of POD showed promising signals related to immune response, inflammatory response and other relevant signals considered to be associated with delirium pathophysiology. Our data supports the hypothesis that epigenetics are playing an important role in pathophysiological mechanism of delirium and suggest the potential usefulness of epigenetics based biomarker of POD.

Competing Interest Statement

Funding: This work was supported by research grants from the National Institute of Mental Health, United States (R01 MH119165). Gen Shinozaki receives research grant support from National institute of health (NIH), National Science Foundation (NSF), Sumitomo Pharma LTD, and Fujitsu Laboratories LTD. Role of the Sponsors: The supporters had no role in the design, analysis, interpretation, or publication of this study. Declaration of Interest: Gen Shinozaki has pending patents 'Epigenetic Biomarker of Delirium Risk' in the PCT Application No. PCT/US19/51276, in the PCT Application No. PCT/US21/63166, and in U.S. Provisional Patent No. 62/731,599. All other authors have declared that no conflict of interest exists.

Footnotes

  • ↵# Takehiko Yamanashi, Kaitlyn J. Crutchley, and Nadia E. Wahba are co-first authors.

  • Previous presentation: none

  • Disclosures: Corresponding author, Gen Shinozaki has pending patents “Epigenetic Biomarker of Delirium Risk” in the PCT Application No. PCT/US19/51276, and in U.S. Provisional Patent No. 62/731,599. All other authors have declared that no conflict of interest exists.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted October 07, 2022.
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Epigenetics of post-operative delirium: A genome-wide DNA methylation study of neurosurgery patients
Takehiko Yamanashi, Kaitlyn J. Crutchley, Nadia E. Wahba, Takaaki Nagao, Pedro S. Marra, Cade C. Akers, Eleanor J. Sullivan, Masaaki Iwata, Mathew A Howard III, Hyunkeun R. Cho, Hiroto Kawasaki, Christopher G. Hughes, Pratik P. Pandharipande, Marco M. Hefti, Gen Shinozaki
bioRxiv 2022.10.04.510706; doi: https://doi.org/10.1101/2022.10.04.510706
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Epigenetics of post-operative delirium: A genome-wide DNA methylation study of neurosurgery patients
Takehiko Yamanashi, Kaitlyn J. Crutchley, Nadia E. Wahba, Takaaki Nagao, Pedro S. Marra, Cade C. Akers, Eleanor J. Sullivan, Masaaki Iwata, Mathew A Howard III, Hyunkeun R. Cho, Hiroto Kawasaki, Christopher G. Hughes, Pratik P. Pandharipande, Marco M. Hefti, Gen Shinozaki
bioRxiv 2022.10.04.510706; doi: https://doi.org/10.1101/2022.10.04.510706

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