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Drug repurposing screens identifies compounds that inhibit α-synuclein oligomers’ membrane disruption and block antibody interactions

View ORCID ProfileArun Kumar Somavarapu, Giulia Kleijwegt, Madhu Nagaraj, Parvez Alam, Janni Nielsen, Daniel Otzen
doi: https://doi.org/10.1101/2022.10.06.511078
Arun Kumar Somavarapu
1Interdisciplinary Nanoscience Center (iNANO), Aarhus University, Gustav Wieds Vej 14, 8000 Aarhus C, Denmark
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  • ORCID record for Arun Kumar Somavarapu
Giulia Kleijwegt
1Interdisciplinary Nanoscience Center (iNANO), Aarhus University, Gustav Wieds Vej 14, 8000 Aarhus C, Denmark
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Madhu Nagaraj
1Interdisciplinary Nanoscience Center (iNANO), Aarhus University, Gustav Wieds Vej 14, 8000 Aarhus C, Denmark
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Parvez Alam
1Interdisciplinary Nanoscience Center (iNANO), Aarhus University, Gustav Wieds Vej 14, 8000 Aarhus C, Denmark
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Janni Nielsen
1Interdisciplinary Nanoscience Center (iNANO), Aarhus University, Gustav Wieds Vej 14, 8000 Aarhus C, Denmark
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Daniel Otzen
1Interdisciplinary Nanoscience Center (iNANO), Aarhus University, Gustav Wieds Vej 14, 8000 Aarhus C, Denmark
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  • For correspondence: dao@inano.au.dk
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ABSTRACT

Small soluble oligomers of the protein α-synuclein (αSO) have been linked to disruptions in neuronal homeostasis, contributing to the development of Parkinson’s Disease (PD). While this makes αSO an obvious drug target, the development of effective therapeutics against αSO are challenged by its low abundance and structural and morphological complexity. Here we employ two different approaches to neutralize toxic interactions made by αSOs with different cellular components. Firstly, we use available data to identify four neuronal proteins as likely candidates for αSO interactions, namely Cfl1, Uchl1, Sirt2 and SerRS. However, despite promising results when immobilized, all 4 proteins only bind weakly to αSO in solution in microfluidic assays, making them inappropriate for screening. In contrast, the formation of stable contacts formed between αSO and vesicles consisting of anionic lipids not only mimics a likely biological role of αSO but also provided a platform to screen two small molecule libraries for disruptors of these contacts. Of the 11 leads obtained in this way, 2 significantly impaired αSO contacts with other proteins in a sandwich ELISA assay using αSO-binding monoclonal antibodies and nanobodies. In addition, 5 of these leads suppressed α-synuclein amyloid formation. Thus a repurposing screening that directly targets a key culprit in PD pathogenesis shows therapeutic potential.

Highlights

  1. The toxic oligomer formed by α-synuclein (αSO) is an important drug target.

  2. Neuronal proteins found by pull-down assays do not bind αSOs in solution.

  3. Liposome assay identifies 7 approved drugs reducing αSO membrane disruption.

  4. We identify different inhibitory mechanisms used by different compounds.

  5. Two top drug hits disrupt αSO binding to oligomer-specific antibodies.

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Competing Interest Statement

The authors have declared no competing interest.

  • Abbreviations

    E. coli
    Escherichia coli
    α-syn
    α-synuclein monomer
    αSO
    α-synuclein oligomer
    ThT
    Thioflavin T
    SPR
    Surface Plasmon Resonance
    FIDA
    Flow Induced Dispersion Analysis
  • Copyright 
    The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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    Posted October 07, 2022.
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    Drug repurposing screens identifies compounds that inhibit α-synuclein oligomers’ membrane disruption and block antibody interactions
    Arun Kumar Somavarapu, Giulia Kleijwegt, Madhu Nagaraj, Parvez Alam, Janni Nielsen, Daniel Otzen
    bioRxiv 2022.10.06.511078; doi: https://doi.org/10.1101/2022.10.06.511078
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    Drug repurposing screens identifies compounds that inhibit α-synuclein oligomers’ membrane disruption and block antibody interactions
    Arun Kumar Somavarapu, Giulia Kleijwegt, Madhu Nagaraj, Parvez Alam, Janni Nielsen, Daniel Otzen
    bioRxiv 2022.10.06.511078; doi: https://doi.org/10.1101/2022.10.06.511078

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