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Targeting tumour-intrinsic neural vulnerabilities of glioblastoma

View ORCID ProfileSohyon Lee, Tobias Weiss, Marcel Bühler, Julien Mena, Zuzanna Lottenbach, Rebekka Wegmann, Michel Bihl, Bartłomiej Augustynek, Sven Baumann, Sandra Goetze, Audrey van Drogen, Flavio Vasella, Elisabeth J. Rushing, Bernd Wollscheid, Matthias A. Hediger, Michael Weller, View ORCID ProfileBerend Snijder
doi: https://doi.org/10.1101/2022.10.07.511321
Sohyon Lee
1Institute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland
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  • ORCID record for Sohyon Lee
Tobias Weiss
2Department of Neurology, Clinical Neuroscience Center, University Hospital Zurich and University of Zurich, Zurich, Switzerland
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Marcel Bühler
2Department of Neurology, Clinical Neuroscience Center, University Hospital Zurich and University of Zurich, Zurich, Switzerland
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Julien Mena
1Institute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland
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Zuzanna Lottenbach
1Institute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland
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Rebekka Wegmann
1Institute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland
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Michel Bihl
3Institute of Pathology, University Hospital Zurich, Zurich, Switzerland
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Bartłomiej Augustynek
4Membrane Transport Discovery Lab, Department of Nephrology and Hypertension and Department of Biomedical Research, Inselspital, University of Bern, Bern, Switzerland
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Sven Baumann
4Membrane Transport Discovery Lab, Department of Nephrology and Hypertension and Department of Biomedical Research, Inselspital, University of Bern, Bern, Switzerland
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Sandra Goetze
5Institute of Translational Medicine (ITM), Department of Health Sciences and Technology, ETH Zurich, Zurich, Switzerland
6Swiss Institute of Bioinformatics, Lausanne, Switzerland
7ETH PHRT Swiss Multi-Omics Center (SMOC), Switzerland
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Audrey van Drogen
5Institute of Translational Medicine (ITM), Department of Health Sciences and Technology, ETH Zurich, Zurich, Switzerland
6Swiss Institute of Bioinformatics, Lausanne, Switzerland
7ETH PHRT Swiss Multi-Omics Center (SMOC), Switzerland
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Flavio Vasella
8Department of Neurosurgery, Clinical Neuroscience Center, University Hospital and University of Zurich, Zurich, Switzerland
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Elisabeth J. Rushing
9Department of Neuropathology, University Hospital Zurich and University of Zurich, Zurich, Switzerland
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Bernd Wollscheid
5Institute of Translational Medicine (ITM), Department of Health Sciences and Technology, ETH Zurich, Zurich, Switzerland
6Swiss Institute of Bioinformatics, Lausanne, Switzerland
7ETH PHRT Swiss Multi-Omics Center (SMOC), Switzerland
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Matthias A. Hediger
4Membrane Transport Discovery Lab, Department of Nephrology and Hypertension and Department of Biomedical Research, Inselspital, University of Bern, Bern, Switzerland
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Michael Weller
2Department of Neurology, Clinical Neuroscience Center, University Hospital Zurich and University of Zurich, Zurich, Switzerland
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Berend Snijder
1Institute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland
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  • ORCID record for Berend Snijder
  • For correspondence: bsnijder@ethz.ch
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Abstract

Glioblastoma is the most common yet deadliest primary brain cancer1. The neural behavior of glioblastoma, including the formation of synaptic circuitry and tumor microtubes, is increasingly understood to be pivotal for disease manifestation2–8. Nonetheless, the few approved treatments for glioblastoma target its oncological nature, while its neural vulnerabilities remain incompletely mapped and clinically unexploited. Here, we systematically survey the neural molecular dependencies and cellular heterogeneity across glioblastoma patients and diverse model systems. In 27 patient tumour samples taken directly after surgery, we identify a spectrum of cancer cell morphologies indicative of poor prognosis and discover a set of repurposable neuroactive drugs with consistent anti-glioblastoma efficacy. Glioblastoma cells exhibit functional dependencies on highly expressed neuroactive drug targets, while interpretable molecular machine learning (COSTAR) reveals their downstream convergence on AP-1-driven tumour suppression. This drug-target connectivity signature is confirmed by highly accurate in silico drug screening on >1 million compounds using COSTAR, as well as by multi-omic profiling of drug-treated glioblastoma cells. Thus, Ca2+-driven AP-1 pathway induction represents a tumour-intrinsic vulnerability at the intersection of oncogenesis and neural activity-dependent signaling. Opportunities for clinical translation of this neural vulnerability are epitomized by the antidepressant Vortioxetine synergizing with current standard of care treatments in vivo. Together, the results presented here provide a mechanistic foundation and conceptual framework for the treatment of glioblastoma based on its neural origins.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted October 07, 2022.
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Targeting tumour-intrinsic neural vulnerabilities of glioblastoma
Sohyon Lee, Tobias Weiss, Marcel Bühler, Julien Mena, Zuzanna Lottenbach, Rebekka Wegmann, Michel Bihl, Bartłomiej Augustynek, Sven Baumann, Sandra Goetze, Audrey van Drogen, Flavio Vasella, Elisabeth J. Rushing, Bernd Wollscheid, Matthias A. Hediger, Michael Weller, Berend Snijder
bioRxiv 2022.10.07.511321; doi: https://doi.org/10.1101/2022.10.07.511321
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Targeting tumour-intrinsic neural vulnerabilities of glioblastoma
Sohyon Lee, Tobias Weiss, Marcel Bühler, Julien Mena, Zuzanna Lottenbach, Rebekka Wegmann, Michel Bihl, Bartłomiej Augustynek, Sven Baumann, Sandra Goetze, Audrey van Drogen, Flavio Vasella, Elisabeth J. Rushing, Bernd Wollscheid, Matthias A. Hediger, Michael Weller, Berend Snijder
bioRxiv 2022.10.07.511321; doi: https://doi.org/10.1101/2022.10.07.511321

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