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A wide foodomics approach coupled with metagenomics elucidates the environmental signature of Protected Geographical Indication potatoes

Anastasia Boutsika, Michail Michailidis, Maria Ganopoulou, Athanasios Dalakouras, Christina Skodra, Aliki Xanthopoulou, George Stamatakis, Martina Samiotaki, Georgia Tanou, Theodoros Moysiadis, Lefteris Angelis, Christos Bazakos, Athanassios Molassiotis, Irini Nianiou-Obeidat, Ifigeneia Mellidou, View ORCID ProfileIoannis Ganopoulos
doi: https://doi.org/10.1101/2022.10.12.511727
Anastasia Boutsika
1Institute of Plant Breeding and Genetic Resources, ELGO-DIMITRA, Thessaloniki Thermi, 570001, Greece
2Laboratory of Genetics and Plant Breeding, School of Agriculture, Aristotle University, 54124 Thessaloniki, Greece
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Michail Michailidis
3Joint Laboratory of Horticulture, ELGO-DIMITRA, Thessaloniki-Thermi 57001, 21 Greece
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Maria Ganopoulou
4School of Informatics, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
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Athanasios Dalakouras
1Institute of Plant Breeding and Genetic Resources, ELGO-DIMITRA, Thessaloniki Thermi, 570001, Greece
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Christina Skodra
5Laboratory of Pomology, Department of Horticulture, Aristotle University of Thessaloniki, 57001 Thessaloniki-Thermi, Greece
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Aliki Xanthopoulou
1Institute of Plant Breeding and Genetic Resources, ELGO-DIMITRA, Thessaloniki Thermi, 570001, Greece
3Joint Laboratory of Horticulture, ELGO-DIMITRA, Thessaloniki-Thermi 57001, 21 Greece
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George Stamatakis
6Institute for Bioinnovation, Biomedical Sciences Research Center “Alexander Fleming”, 16672, Vari, Greece
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Martina Samiotaki
6Institute for Bioinnovation, Biomedical Sciences Research Center “Alexander Fleming”, 16672, Vari, Greece
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Georgia Tanou
3Joint Laboratory of Horticulture, ELGO-DIMITRA, Thessaloniki-Thermi 57001, 21 Greece
7Institute of Soil and Water Resources, ELGO-DIMITRA, Thessaloniki-Thermi, 57001, Greece
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Theodoros Moysiadis
1Institute of Plant Breeding and Genetic Resources, ELGO-DIMITRA, Thessaloniki Thermi, 570001, Greece
8Department of Computer Science, School of Sciences and Engineering, University of Nicosia, Nicosia 2417, Cyprus
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Lefteris Angelis
4School of Informatics, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
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Christos Bazakos
1Institute of Plant Breeding and Genetic Resources, ELGO-DIMITRA, Thessaloniki Thermi, 570001, Greece
3Joint Laboratory of Horticulture, ELGO-DIMITRA, Thessaloniki-Thermi 57001, 21 Greece
9Max Planck Institute for Plant Breeding Research, Department of Comparative Development and Genetics, Carl-von-Linné-Weg 10, 50829 Cologne, Germany
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Athanassios Molassiotis
5Laboratory of Pomology, Department of Horticulture, Aristotle University of Thessaloniki, 57001 Thessaloniki-Thermi, Greece
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Irini Nianiou-Obeidat
2Laboratory of Genetics and Plant Breeding, School of Agriculture, Aristotle University, 54124 Thessaloniki, Greece
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Ifigeneia Mellidou
1Institute of Plant Breeding and Genetic Resources, ELGO-DIMITRA, Thessaloniki Thermi, 570001, Greece
3Joint Laboratory of Horticulture, ELGO-DIMITRA, Thessaloniki-Thermi 57001, 21 Greece
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  • For correspondence: giannis.ganopoulos@gmail.com imellidou@elgo.gr
Ioannis Ganopoulos
1Institute of Plant Breeding and Genetic Resources, ELGO-DIMITRA, Thessaloniki Thermi, 570001, Greece
3Joint Laboratory of Horticulture, ELGO-DIMITRA, Thessaloniki-Thermi 57001, 21 Greece
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  • ORCID record for Ioannis Ganopoulos
  • For correspondence: giannis.ganopoulos@gmail.com imellidou@elgo.gr
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Summary

The term “terroir” has been widely employed to link differential geographic phenotypes with sensorial signatures of agricultural food products, influenced by agricultural practices, soil type and climate. Nowadays, the Geographical Indications labeling has been developed to safeguard the quality of plant-derived food that is linked to a certain terroir and is generally considered as an indication of superior organoleptic properties and phytochemical profile. As the dynamics of agroecosystems are highly intricate, consisting of tangled networks of interactions between plants, microorganisms, and the surrounding environment, the recognition of the key molecular components of terroir fingerprinting remains a great challenge to protect both the origin and the safety of food commodities. Furthermore, the contribution of microbiome as a potential driver of the terroir signature has been underestimated until recently. Herein, we present a first comprehensive view of the multi-omic landscape related to transcriptome, proteome, epigenome, and metagenome of the popular Protected Geographical Indication potatoes of Naxos.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • We added the second affiliation of one of co-author (Moysiadis Theodoros).

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted December 08, 2022.
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A wide foodomics approach coupled with metagenomics elucidates the environmental signature of Protected Geographical Indication potatoes
Anastasia Boutsika, Michail Michailidis, Maria Ganopoulou, Athanasios Dalakouras, Christina Skodra, Aliki Xanthopoulou, George Stamatakis, Martina Samiotaki, Georgia Tanou, Theodoros Moysiadis, Lefteris Angelis, Christos Bazakos, Athanassios Molassiotis, Irini Nianiou-Obeidat, Ifigeneia Mellidou, Ioannis Ganopoulos
bioRxiv 2022.10.12.511727; doi: https://doi.org/10.1101/2022.10.12.511727
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A wide foodomics approach coupled with metagenomics elucidates the environmental signature of Protected Geographical Indication potatoes
Anastasia Boutsika, Michail Michailidis, Maria Ganopoulou, Athanasios Dalakouras, Christina Skodra, Aliki Xanthopoulou, George Stamatakis, Martina Samiotaki, Georgia Tanou, Theodoros Moysiadis, Lefteris Angelis, Christos Bazakos, Athanassios Molassiotis, Irini Nianiou-Obeidat, Ifigeneia Mellidou, Ioannis Ganopoulos
bioRxiv 2022.10.12.511727; doi: https://doi.org/10.1101/2022.10.12.511727

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