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Improved breeding for Fusarium pseudograminarium (Fusarium crown rot) using qPCR measurement of infection in multi-species winter cereal experiments

View ORCID ProfileAndrew Milgate, Brad Baxter, Steven Simpfendorfer, Nannan Yang, Beverly Orchard, Ben Ovenden
doi: https://doi.org/10.1101/2022.10.12.512005
Andrew Milgate
1NSW Department of Primary Industries, Wagga Wagga Agricultural Institute, Pine Gully Road, Wagga Wagga, NSW 2650, Australia
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  • ORCID record for Andrew Milgate
  • For correspondence: andrew.milgate@dpi.nsw.gov.au
Brad Baxter
1NSW Department of Primary Industries, Wagga Wagga Agricultural Institute, Pine Gully Road, Wagga Wagga, NSW 2650, Australia
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Steven Simpfendorfer
2NSW Department of Primary Industries, Tamworth Agricultural Institute, 4 Marsden Park Rd, Tamworth, NSW 2340, Australia
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Nannan Yang
1NSW Department of Primary Industries, Wagga Wagga Agricultural Institute, Pine Gully Road, Wagga Wagga, NSW 2650, Australia
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Beverly Orchard
1NSW Department of Primary Industries, Wagga Wagga Agricultural Institute, Pine Gully Road, Wagga Wagga, NSW 2650, Australia
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Ben Ovenden
1NSW Department of Primary Industries, Wagga Wagga Agricultural Institute, Pine Gully Road, Wagga Wagga, NSW 2650, Australia
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Abstract

Fusarium crown rot (FCR) causes significant grain yield loss in winter cereals around the world. Breeding for resistance and/or tolerance to FCR has been slow with relatively limited success. In this study, multi-species experiments were used to demonstrate an improved method to quantify FCR infection levels at plant maturity using qPCR, as well as the genotype yield retention using residual regression deviation. Using qPCR to measure FCR infection allowed a higher degree of resolution between genotypes than traditional visual stem basal browning assessments. The results were consistent across three environments with different levels of disease expression. The improved measure of FCR infection along with genotype yield retention allows for partitioning of both tolerance and partial resistance. Together these methods offer new insights to FCR partial resistance and its relative importance to tolerance in bread wheat and barley. This new approach offers a more robust, cost-effective way to select for both FCR traits within breeding programs.

Key message Genetic gain for tolerance and partial resistance against Fusarium crown rot (FCR) in winter cereals has been impeded by laborious and variable visual measures of infection severity. This paper presents results of an improved method to quantify FCR infection that are strongly correlated to yield loss and reveal previously unrecognised partial resistance in barley and wheat varieties.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted October 17, 2022.
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Improved breeding for Fusarium pseudograminarium (Fusarium crown rot) using qPCR measurement of infection in multi-species winter cereal experiments
Andrew Milgate, Brad Baxter, Steven Simpfendorfer, Nannan Yang, Beverly Orchard, Ben Ovenden
bioRxiv 2022.10.12.512005; doi: https://doi.org/10.1101/2022.10.12.512005
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Improved breeding for Fusarium pseudograminarium (Fusarium crown rot) using qPCR measurement of infection in multi-species winter cereal experiments
Andrew Milgate, Brad Baxter, Steven Simpfendorfer, Nannan Yang, Beverly Orchard, Ben Ovenden
bioRxiv 2022.10.12.512005; doi: https://doi.org/10.1101/2022.10.12.512005

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