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Precisely patterned nanofibers made from extendable protein multiplexes

View ORCID ProfileNeville P. Bethel, View ORCID ProfileAndrew J. Borst, View ORCID ProfileFabio Parmeggiani, View ORCID ProfileMatthew J. Bick, View ORCID ProfileTJ Brunette, Hannah Nguyen, Alex Kang, Asim K. Bera, View ORCID ProfileLauren Carter, View ORCID ProfileMarcos C. Miranda, View ORCID ProfileRyan Kibler, Mila Lamb, View ORCID ProfileXinting Li, View ORCID ProfileBanumathi Sankaran, View ORCID ProfileDavid Baker
doi: https://doi.org/10.1101/2022.10.14.511843
Neville P. Bethel
1Department of Biochemistry, University of Washington, Seattle, WA, USA
2Institute for Protein Design, University of Washington, Seattle, WA, USA
3Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA
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  • ORCID record for Neville P. Bethel
Andrew J. Borst
1Department of Biochemistry, University of Washington, Seattle, WA, USA
2Institute for Protein Design, University of Washington, Seattle, WA, USA
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Fabio Parmeggiani
4School of Chemistry, University of Bristol, Bristol, United Kingdom
5School of Biochemistry, University of Bristol, Bristol, United Kingdom
6Bristol Biodesign Institute, University of Bristol, Bristol, United Kingdom
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Matthew J. Bick
1Department of Biochemistry, University of Washington, Seattle, WA, USA
2Institute for Protein Design, University of Washington, Seattle, WA, USA
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TJ Brunette
1Department of Biochemistry, University of Washington, Seattle, WA, USA
2Institute for Protein Design, University of Washington, Seattle, WA, USA
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Hannah Nguyen
1Department of Biochemistry, University of Washington, Seattle, WA, USA
2Institute for Protein Design, University of Washington, Seattle, WA, USA
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Alex Kang
1Department of Biochemistry, University of Washington, Seattle, WA, USA
2Institute for Protein Design, University of Washington, Seattle, WA, USA
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Asim K. Bera
1Department of Biochemistry, University of Washington, Seattle, WA, USA
2Institute for Protein Design, University of Washington, Seattle, WA, USA
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Lauren Carter
1Department of Biochemistry, University of Washington, Seattle, WA, USA
2Institute for Protein Design, University of Washington, Seattle, WA, USA
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Marcos C. Miranda
1Department of Biochemistry, University of Washington, Seattle, WA, USA
2Institute for Protein Design, University of Washington, Seattle, WA, USA
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Ryan Kibler
1Department of Biochemistry, University of Washington, Seattle, WA, USA
2Institute for Protein Design, University of Washington, Seattle, WA, USA
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Mila Lamb
1Department of Biochemistry, University of Washington, Seattle, WA, USA
2Institute for Protein Design, University of Washington, Seattle, WA, USA
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Xinting Li
1Department of Biochemistry, University of Washington, Seattle, WA, USA
2Institute for Protein Design, University of Washington, Seattle, WA, USA
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Banumathi Sankaran
7Berkeley Center for Structural Biology, Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA
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David Baker
1Department of Biochemistry, University of Washington, Seattle, WA, USA
2Institute for Protein Design, University of Washington, Seattle, WA, USA
3Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA
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  • For correspondence: dabaker@uw.edu
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Abstract

Molecular systems with coincident cyclic and superhelical symmetry axes have considerable advantages for materials design as they can be readily lengthened or shortened by changing the length of the constituent monomers. Among proteins, alpha helical coiled coils have such symmetric extendable architectures, but are limited by the relatively fixed geometry and flexibility of the helical protomers. Here, we describe a systematic approach to generating modular and rigid repeat protein oligomers with coincident C2 to C8 and superhelical symmetry axes that can be readily extended by repeat propagation. From these building blocks, we demonstrate that a wide range of unbounded fibers can be systematically designed by introducing hydrophilic surface patches that force staggering of the monomers; the geometry of such fibers can be precisely tuned by varying the number of repeat units in the monomer and the placement of the hydrophilic patches.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted October 14, 2022.
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Precisely patterned nanofibers made from extendable protein multiplexes
Neville P. Bethel, Andrew J. Borst, Fabio Parmeggiani, Matthew J. Bick, TJ Brunette, Hannah Nguyen, Alex Kang, Asim K. Bera, Lauren Carter, Marcos C. Miranda, Ryan Kibler, Mila Lamb, Xinting Li, Banumathi Sankaran, David Baker
bioRxiv 2022.10.14.511843; doi: https://doi.org/10.1101/2022.10.14.511843
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Precisely patterned nanofibers made from extendable protein multiplexes
Neville P. Bethel, Andrew J. Borst, Fabio Parmeggiani, Matthew J. Bick, TJ Brunette, Hannah Nguyen, Alex Kang, Asim K. Bera, Lauren Carter, Marcos C. Miranda, Ryan Kibler, Mila Lamb, Xinting Li, Banumathi Sankaran, David Baker
bioRxiv 2022.10.14.511843; doi: https://doi.org/10.1101/2022.10.14.511843

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