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Biostatistics and its impact on hazard characterization using in vitro developmental neurotoxicity assays

View ORCID ProfileHagen Eike Keßel, View ORCID ProfileStefan Masjosthusmann, View ORCID ProfileKristina Bartmann, View ORCID ProfileJonathan Blum, View ORCID ProfileArif Dönmez, View ORCID ProfileNils Förster, View ORCID ProfileJördis Klose, View ORCID ProfileAxel Mosig, View ORCID ProfileMelanie Pahl, View ORCID ProfileMarcel Leist, View ORCID ProfileMartin Scholze, View ORCID ProfileEllen Fritsche
doi: https://doi.org/10.1101/2022.10.18.512648
Hagen Eike Keßel
1IUF - Leibniz Research Institute for Environmental Medicine, 40225 Düsseldorf, Germany
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  • For correspondence: eike.kessel@iuf-duesseldorf.de
Stefan Masjosthusmann
1IUF - Leibniz Research Institute for Environmental Medicine, 40225 Düsseldorf, Germany
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Kristina Bartmann
1IUF - Leibniz Research Institute for Environmental Medicine, 40225 Düsseldorf, Germany
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  • ORCID record for Kristina Bartmann
Jonathan Blum
2In vitro Toxicology and Biomedicine, Dept inaugurated by the Doerenkamp-Zbinden foundation, University of Konstanz, 78457 Konstanz, Germany
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Arif Dönmez
1IUF - Leibniz Research Institute for Environmental Medicine, 40225 Düsseldorf, Germany
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Nils Förster
4Bioinformatics Group, Ruhr University Bochum, 44801 Bochum, Germany
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Jördis Klose
1IUF - Leibniz Research Institute for Environmental Medicine, 40225 Düsseldorf, Germany
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Axel Mosig
4Bioinformatics Group, Ruhr University Bochum, 44801 Bochum, Germany
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  • ORCID record for Axel Mosig
Melanie Pahl
1IUF - Leibniz Research Institute for Environmental Medicine, 40225 Düsseldorf, Germany
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  • ORCID record for Melanie Pahl
Marcel Leist
2In vitro Toxicology and Biomedicine, Dept inaugurated by the Doerenkamp-Zbinden foundation, University of Konstanz, 78457 Konstanz, Germany
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Martin Scholze
5Brunell University, London, UK
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Ellen Fritsche
1IUF - Leibniz Research Institute for Environmental Medicine, 40225 Düsseldorf, Germany
3Medical Faculty, Heinrich-Heine-University, Düsseldorf, Germany
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Abstract

In the field of hazard assessment, Benchmark concentrations (BMC) and their associated uncertainty are of particular interest for regulatory decision making. The BMC estimation consists of various statistical decisions to be made, which depend largely on factors such as experimental design and assay endpoint features. In current data practice, the experimenter is often responsible for the data analysis and therefore relies on statistical software without being aware about the software default settings and how they can impact the outputs of data analysis. To provide more insight into how statistical decision making can influence the outcomes of data analysis and interpretation, we have used case studies on a large dataset produced by a developmental neurotoxicity (DNT) in vitro battery (DNT IVB). Here we focused on the BMC and its confidence interval (CI) estimation, as well as on the final hazard classification. We identified five crucial statistical decisions experimenter have to face during data analysis: choice of replicate averaging, response data normalization, regression modelling, BMC and CI estimation, as well as choice of benchmark response levels. In addition, the strength of our data evaluation platform is the integration of endpoint-specific hazard classifications, including flagging systems for uncertain cases, which none of the so far existing statistical data analysis platforms provide. The insights gained in this study demonstrate how important fit-for-purpose, internationally harmonized and accepted data evaluation and analysis procedures are for an objective hazard classification.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted October 21, 2022.
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Biostatistics and its impact on hazard characterization using in vitro developmental neurotoxicity assays
Hagen Eike Keßel, Stefan Masjosthusmann, Kristina Bartmann, Jonathan Blum, Arif Dönmez, Nils Förster, Jördis Klose, Axel Mosig, Melanie Pahl, Marcel Leist, Martin Scholze, Ellen Fritsche
bioRxiv 2022.10.18.512648; doi: https://doi.org/10.1101/2022.10.18.512648
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Biostatistics and its impact on hazard characterization using in vitro developmental neurotoxicity assays
Hagen Eike Keßel, Stefan Masjosthusmann, Kristina Bartmann, Jonathan Blum, Arif Dönmez, Nils Förster, Jördis Klose, Axel Mosig, Melanie Pahl, Marcel Leist, Martin Scholze, Ellen Fritsche
bioRxiv 2022.10.18.512648; doi: https://doi.org/10.1101/2022.10.18.512648

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