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Clustering laminar cytoarchitecture: in vivo parcellation based on cortical granularity

View ORCID ProfileIttai Shamir, View ORCID ProfileYaniv Assaf, View ORCID ProfileRon Shamir
doi: https://doi.org/10.1101/2022.10.29.514347
Ittai Shamir
aDepartment of Neurobiology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
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  • For correspondence: ittaisha@mail.tau.ac.il
Yaniv Assaf
aDepartment of Neurobiology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
bSagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel
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Ron Shamir
cBlavatnik School of Computer Science, Tel-Aviv University, Tel-Aviv, Israel
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Abstract

The laminar microstructure of the cerebral cortex is considered a unique anatomical mark of the development, function, connectivity, and even various pathologies of the brain. In recent years, multiple neuroimaging studies have utilized magnetic resonance imaging (MRI) relaxometry to visualize and explore this intricate microstructure. By successfully delineating the cortical laminar components, the applicability of T1 relaxometry has been expanded beyond solely a direct measure of myeline content. However, validating its applicability as a measure of cortical cytoarchitecture demands analyzing the complex resulting laminar datasets. In this study, we adapt and implement an algorithm for clustering cell omics profiles to cluster these complex microstructural cortical datasets. The resulting clusters correspond with an established atlas of cytoarchitectonic features, providing robust validation of T1 imaging as a tool for exploring cortical laminar composition. Lastly, we demonstrate the applicability of this framework in the exploration of the cytoarchitectonic features behind various unique skillsets.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵† The authors wish it to be known that, in their opinion, the last two authors should be regarded as Joint Last Authors

  • Additional subjects and analyses

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted January 25, 2023.
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Clustering laminar cytoarchitecture: in vivo parcellation based on cortical granularity
Ittai Shamir, Yaniv Assaf, Ron Shamir
bioRxiv 2022.10.29.514347; doi: https://doi.org/10.1101/2022.10.29.514347
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Clustering laminar cytoarchitecture: in vivo parcellation based on cortical granularity
Ittai Shamir, Yaniv Assaf, Ron Shamir
bioRxiv 2022.10.29.514347; doi: https://doi.org/10.1101/2022.10.29.514347

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