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An iterative search algorithm to identify oscillatory dynamics in neurophysiological time series

Amanda M. Beck, Mingjian He, Rodrigo G. Gutierrez, Gladia C. Hotan, View ORCID ProfilePatrick L. Purdon
doi: https://doi.org/10.1101/2022.10.30.514422
Amanda M. Beck
1Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, 77 Massachusetts Ave, Cambridge, 02139, MA, USA
2Department of Anesthesia, Critical Care, and Pain Medicine, Massachusetts General Hospital, 55 Fruit St., Boston, 02114, MA, USA
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Mingjian He
2Department of Anesthesia, Critical Care, and Pain Medicine, Massachusetts General Hospital, 55 Fruit St., Boston, 02114, MA, USA
3Health Sciences and Technology, Massachusetts Institute of Technology, 77 Massachusetts Ave, Cambridge, 02139, MA, USA
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Rodrigo G. Gutierrez
2Department of Anesthesia, Critical Care, and Pain Medicine, Massachusetts General Hospital, 55 Fruit St., Boston, 02114, MA, USA
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Gladia C. Hotan
4Institute of High Performance Computing, A*STAR, 1 Fusionopolis Way, #16-16 Connexis, 138632, Singapore
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Patrick L. Purdon
2Department of Anesthesia, Critical Care, and Pain Medicine, Massachusetts General Hospital, 55 Fruit St., Boston, 02114, MA, USA
5Department of Anaesthesia, Harvard Medical School, 25 Shattuck St, Boston, 02115, MA, USA
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  • ORCID record for Patrick L. Purdon
  • For correspondence: [email protected]
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Abstract

Neural oscillations have long been recognized for their mechanistic importance in coordinating activity within and between brain circuits. Co-occurring broad-band, non-periodic signals are also ubiquitous in neural data and are thought to reflect the characteristics of populationlevel neuronal spiking activity. Identifying oscillatory activity distinct from broadband signals is therefore an important, yet surprisingly difficult, problem in neuroscience. Commonly-used bandpass filters produce spurious oscillations when applied to broad-band noise and may be illinformed by canonical frequency bands. Curve-fitting procedures have been developed to identify peaks in the power spectrum distinct from broadband noise. Unfortunately, these ad hoc methods are prone to overfitting and are difficult to interpret in the absence of generative models to formally represent oscillatory behavior. Here we present a novel method to identify and characterize neural oscillations distinct from broad-band noise. First, we propose a new conceptual construct that makes clear, from a dynamical systems perspective, when oscillations are present or not. We then use this construct to develop generative models for neural oscillations. We show through extensive analyses of simulated and human EEG data that our approach identifies oscillations and their characteristics far more accurately than widely used methods, achieving near-perfect recovery of the number of oscillations when the SNR exceeds a very modest threshold. We also show that our method can automatically identify subject-level variations in frequency to overcome the limitations of fixed canonical frequency bands. Finally we demonstrate how our method can extract clinically-relevant neurophysiological features with greater statistical efficiency other established methods.

Competing Interest Statement

P.L.P. is an inventor on patents assigned to MGH related to brain monitoring, an inventor on a patent licensed to Masimo by Massachusetts General Hospital and a Co-founder of PASCALL Systems, Inc., a company developing closed-loop physiological control systems for anesthesiology. P.L.P. is an inventor on patents assigned to MGH related to brain monitoring, an inventor on a patent licensed to Masimo by Massachusetts General Hospital and a Co-founder of PASCALL Systems, Inc., a company developing closed-loop physiological control systems for anesthesiology.

Footnotes

  • Author list, typos, some wording.

  • https://github.com/mh105/somata

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted December 12, 2023.
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An iterative search algorithm to identify oscillatory dynamics in neurophysiological time series
Amanda M. Beck, Mingjian He, Rodrigo G. Gutierrez, Gladia C. Hotan, Patrick L. Purdon
bioRxiv 2022.10.30.514422; doi: https://doi.org/10.1101/2022.10.30.514422
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An iterative search algorithm to identify oscillatory dynamics in neurophysiological time series
Amanda M. Beck, Mingjian He, Rodrigo G. Gutierrez, Gladia C. Hotan, Patrick L. Purdon
bioRxiv 2022.10.30.514422; doi: https://doi.org/10.1101/2022.10.30.514422

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