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Structural basis of Irgb6 inactivation by Toxoplasma gondii through the phosphorylation of switch I

Hiromichi Okuma, Yumiko Saijo-Hamano, Aalaa Alrahman Sherif, Emi Hashizaki, Naoki Sakai, Takaaki Kato, Tsuyoshi Imasaki, Eriko Nitta, Miwa Sasai, Yoshimasa Maniwa, Hidetaka Kosako, Daron M Standley, Masahiro Yamamoto, View ORCID ProfileRyo Nitta
doi: https://doi.org/10.1101/2022.10.31.514472
Hiromichi Okuma
1Division of Structural Medicine and Anatomy, Department of Physiology and Cell Biology, Kobe University Graduate School of Medicine, Kobe, Japan
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Yumiko Saijo-Hamano
1Division of Structural Medicine and Anatomy, Department of Physiology and Cell Biology, Kobe University Graduate School of Medicine, Kobe, Japan
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Aalaa Alrahman Sherif
2Department of Genome Informatics, Research Institute for Microbial Diseases, Osaka, Japan
3Laboratory of Systems Immunology, WPI Immunology Frontier Research Center, Osaka University, Osaka, Japan
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Emi Hashizaki
4Laboratory of Immunoparasitology, Osaka University, Osaka, Japan
5Department of Immunoparasitology, Research Institute for Microbial Diseases, Osaka, Japan
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Naoki Sakai
6RIKEN SPring-8 Center, Hyogo, 679-5148, Japan
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Takaaki Kato
1Division of Structural Medicine and Anatomy, Department of Physiology and Cell Biology, Kobe University Graduate School of Medicine, Kobe, Japan
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Tsuyoshi Imasaki
1Division of Structural Medicine and Anatomy, Department of Physiology and Cell Biology, Kobe University Graduate School of Medicine, Kobe, Japan
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Eriko Nitta
1Division of Structural Medicine and Anatomy, Department of Physiology and Cell Biology, Kobe University Graduate School of Medicine, Kobe, Japan
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Miwa Sasai
4Laboratory of Immunoparasitology, Osaka University, Osaka, Japan
5Department of Immunoparasitology, Research Institute for Microbial Diseases, Osaka, Japan
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Yoshimasa Maniwa
7Division of Thoracic Surgery, Kobe University Graduate School of Medicine, Kobe, Japan
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Hidetaka Kosako
8Division of Cell Signaling, Fujii Memorial Institute of Medical Sciences, Tokushima University, Tokushima, Japan
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Daron M Standley
2Department of Genome Informatics, Research Institute for Microbial Diseases, Osaka, Japan
3Laboratory of Systems Immunology, WPI Immunology Frontier Research Center, Osaka University, Osaka, Japan
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Masahiro Yamamoto
4Laboratory of Immunoparasitology, Osaka University, Osaka, Japan
5Department of Immunoparasitology, Research Institute for Microbial Diseases, Osaka, Japan
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  • For correspondence: ryonitta@med.kobe-u.ac.jp myamamoto@biken.osaka-u.ac.jp
Ryo Nitta
1Division of Structural Medicine and Anatomy, Department of Physiology and Cell Biology, Kobe University Graduate School of Medicine, Kobe, Japan
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  • ORCID record for Ryo Nitta
  • For correspondence: ryonitta@med.kobe-u.ac.jp myamamoto@biken.osaka-u.ac.jp
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Abstract

Upon infection with Toxoplasma gondii, host cells produce immune-related GTPases (IRGs) to kill the parasite. T. gondii counters this response by releasing ROP18 kinase, which inactivates IRG GTPases and inhibits their recruitment to the T. gondii parasitophorous vacuole (PV). However, the molecular mechanisms of this process are entirely unknown. Here we report the atomic structures of Irgb6 with a phosphomimetic mutation by ROP18. The mutant has lower GTPase activity and is not recruited to the PV membrane (PVM). The crystal structure shows the mutant exhibit a distinct conformation from the physiological nucleotide-free form, thus preventing GTPase cycling. This change allosterically modifies the conformation of the membrane-binding interface, preventing physiological PVM-binding. Docking simulation of PI5P also supports the impaired binding of the mutant to PVM. We thus demonstrate the structural basis for T. gondii escape from host cell-autonomous defense, and provide a structural model for regulating enzymatic activity by phosphorylation.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted November 01, 2022.
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Structural basis of Irgb6 inactivation by Toxoplasma gondii through the phosphorylation of switch I
Hiromichi Okuma, Yumiko Saijo-Hamano, Aalaa Alrahman Sherif, Emi Hashizaki, Naoki Sakai, Takaaki Kato, Tsuyoshi Imasaki, Eriko Nitta, Miwa Sasai, Yoshimasa Maniwa, Hidetaka Kosako, Daron M Standley, Masahiro Yamamoto, Ryo Nitta
bioRxiv 2022.10.31.514472; doi: https://doi.org/10.1101/2022.10.31.514472
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Structural basis of Irgb6 inactivation by Toxoplasma gondii through the phosphorylation of switch I
Hiromichi Okuma, Yumiko Saijo-Hamano, Aalaa Alrahman Sherif, Emi Hashizaki, Naoki Sakai, Takaaki Kato, Tsuyoshi Imasaki, Eriko Nitta, Miwa Sasai, Yoshimasa Maniwa, Hidetaka Kosako, Daron M Standley, Masahiro Yamamoto, Ryo Nitta
bioRxiv 2022.10.31.514472; doi: https://doi.org/10.1101/2022.10.31.514472

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