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The molecular principles governing HCMV infection outcome

View ORCID ProfileMichal Schwartz, Miri Shnayder, View ORCID ProfileAharon Nachshon, Tamar Arazi, Yaarit Kitsberg, Roi Levi Samia, Michael Lavi, Rottem Kuint, Reuven Tsabari, View ORCID ProfileNoam Stern-Ginossar
doi: https://doi.org/10.1101/2022.10.31.514490
Michal Schwartz
1Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel
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  • For correspondence: michalsc@weizmann.ac.il noam.stern-ginossar@weizmann.ac.il
Miri Shnayder
1Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel
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Aharon Nachshon
1Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel
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Tamar Arazi
1Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel
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Yaarit Kitsberg
1Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel
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Roi Levi Samia
1Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel
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Michael Lavi
1Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel
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Rottem Kuint
2Institute of Pulmonary Medicine, Hadassah Hebrew University Medical Center, Faculty of Medicine, Hebrew University, Jerusalem, Israel
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Reuven Tsabari
3Pediatric Pulmonology and CF Unit, Department of Pediatrics, Hadassah Hebrew University Medical Center, Jerusalem, Israel
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Noam Stern-Ginossar
1Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel
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  • ORCID record for Noam Stern-Ginossar
  • For correspondence: michalsc@weizmann.ac.il noam.stern-ginossar@weizmann.ac.il
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Abstract

Infection with Human cytomegalovirus (HCMV) can result in either productive or non-productive infection, the latter potentially leading to establishment of latency, but the molecular factors that dictate these different infection outcomes are elusive. Macrophages are known targets of HCMV and considered to be permissive for productive infection, while monocytes, their precursors, are latently infected. Here we reveal that infection of macrophages is more complex than previously appreciated and can result in either productive or non-productive infection. By analyzing the progression of HCMV infection in monocytes and macrophages using single cell transcriptomics, we uncover that the level of viral gene expression, and specifically the expression of the major immediate early proteins, IE1 and IE2, is the principal barrier for establishing productive infection. On the cellular side, we reveal that the cell intrinsic levels of interferon stimulated genes (ISG), but not their induction, is a main determinant of infection outcome and that intrinsic ISG levels are downregulated with monocyte differentiation, partially explaining why macrophages are more susceptible to productive HCMV infection. We further show that, compared to monocytes, non-productive macrophages maintain higher levels of viral transcripts and are able to reactivate, raising the possibility that they may serve as latency reservoirs. Overall, by harnessing the tractable system of monocyte differentiation we decipher underlying principles that control HCMV infection outcome, and propose macrophages as a potential HCMV reservoir in tissues.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted October 31, 2022.
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The molecular principles governing HCMV infection outcome
Michal Schwartz, Miri Shnayder, Aharon Nachshon, Tamar Arazi, Yaarit Kitsberg, Roi Levi Samia, Michael Lavi, Rottem Kuint, Reuven Tsabari, Noam Stern-Ginossar
bioRxiv 2022.10.31.514490; doi: https://doi.org/10.1101/2022.10.31.514490
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The molecular principles governing HCMV infection outcome
Michal Schwartz, Miri Shnayder, Aharon Nachshon, Tamar Arazi, Yaarit Kitsberg, Roi Levi Samia, Michael Lavi, Rottem Kuint, Reuven Tsabari, Noam Stern-Ginossar
bioRxiv 2022.10.31.514490; doi: https://doi.org/10.1101/2022.10.31.514490

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