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The molecular genetic landscape of human brain size variation

Jakob Seidlitz, Travis T. Mallard, Jacob W. Vogel, Younga H. Lee, Varun Warrier, Gareth Ball, Oskar Hansson, Leanna M. Hernandez, Ayan S. Mandal, Konrad Wagstyl, Michael V. Lombardo, Eric Courchesne, Joseph T. Glessner, Theodore D. Satterthwaite, Richard A.I. Bethlehem, Lifespan Brain Chart Consortium, Shinya Tasaki, Bernard Ng, Chris Gaiteri, Jordan W. Smoller, Tian Ge, Michael J. Gandal, Aaron F. Alexander-Bloch
doi: https://doi.org/10.1101/2022.11.03.514996
Jakob Seidlitz
1Lifespan Brain Institute, The Children’s Hospital of Philadelphia and Penn Medicine, Philadelphia, PA, USA
2Department of Child and Adolescent Psychiatry and Behavioral Science, The Children’s Hospital of Philadelphia, Philadelphia, PA, USA
3Department of Psychiatry, University of Pennsylvania, Philadelphia, PA, USA
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  • For correspondence: jakob.seidlitz@pennmedicine.upenn.edu seidlitzj@chop.edu
Travis T. Mallard
4Psychiatric and Neurodevelopmental Genetics Unit, Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, USA
5Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Boston, MA, USA
6Department of Psychiatry, Harvard Medical School, Boston, MA, USA
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Jacob W. Vogel
3Department of Psychiatry, University of Pennsylvania, Philadelphia, PA, USA
7Lifespan Informatics and Neuroimaging Center, University of Pennsylvania School of Medicine, Philadelphia, PA, USA
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Younga H. Lee
4Psychiatric and Neurodevelopmental Genetics Unit, Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, USA
5Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Boston, MA, USA
6Department of Psychiatry, Harvard Medical School, Boston, MA, USA
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Varun Warrier
8Department of Psychiatry, University of Cambridge, Cambridge, UK
9Department of Psychology, University of Cambridge, Cambridge, UK
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Gareth Ball
10Developmental Imaging, Murdoch Children’s Research Institute, Melbourne, Victoria, Australia
11Department of Paediatrics, University of Melbourne, Melbourne, Victoria, Australia
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Oskar Hansson
12Clinical Memory Research Unit, Department of Clinical Sciences Malmö, Lund University, Malmö, Sweden
13Memory Clinic, Skåne University Hospital, Malmö, Sweden
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Leanna M. Hernandez
14Semel Institute for Neuroscience and Human Behavior, University of California Los Angeles, Los Angeles, CA, USA
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Ayan S. Mandal
1Lifespan Brain Institute, The Children’s Hospital of Philadelphia and Penn Medicine, Philadelphia, PA, USA
2Department of Child and Adolescent Psychiatry and Behavioral Science, The Children’s Hospital of Philadelphia, Philadelphia, PA, USA
3Department of Psychiatry, University of Pennsylvania, Philadelphia, PA, USA
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Konrad Wagstyl
15Wellcome Centre for Human Neuroimaging, University College London, London, UK
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Michael V. Lombardo
16Laboratory for Autism and Neurodevelopmental Disorders, Center for Neuroscience and Cognitive Systems @UniTn, Istituto Italiano di Tecnologia, Rovereto, Italy
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Eric Courchesne
17Department of Neuroscience, University of California, San Diego, San Diego, CA, USA
18Autism Center of Excellence, University of California, San Diego, San Diego, CA, USA
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Joseph T. Glessner
19The Center for Applied Genomics, The Children’s Hospital of Philadelphia, Philadelphia, PA, USA
20Department of Pediatrics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA
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Theodore D. Satterthwaite
1Lifespan Brain Institute, The Children’s Hospital of Philadelphia and Penn Medicine, Philadelphia, PA, USA
3Department of Psychiatry, University of Pennsylvania, Philadelphia, PA, USA
7Lifespan Informatics and Neuroimaging Center, University of Pennsylvania School of Medicine, Philadelphia, PA, USA
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Richard A.I. Bethlehem
8Department of Psychiatry, University of Cambridge, Cambridge, UK
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Shinya Tasaki
22Rush Alzheimer’s Disease Center, Rush University Medical Center, Chicago, IL, USA
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Bernard Ng
22Rush Alzheimer’s Disease Center, Rush University Medical Center, Chicago, IL, USA
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Chris Gaiteri
22Rush Alzheimer’s Disease Center, Rush University Medical Center, Chicago, IL, USA
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Jordan W. Smoller
4Psychiatric and Neurodevelopmental Genetics Unit, Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, USA
5Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Boston, MA, USA
6Department of Psychiatry, Harvard Medical School, Boston, MA, USA
23Center for Precision Psychiatry, Massachusetts General Hospital, Boston, MA, USA
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Tian Ge
4Psychiatric and Neurodevelopmental Genetics Unit, Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, USA
5Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Boston, MA, USA
6Department of Psychiatry, Harvard Medical School, Boston, MA, USA
23Center for Precision Psychiatry, Massachusetts General Hospital, Boston, MA, USA
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Michael J. Gandal
1Lifespan Brain Institute, The Children’s Hospital of Philadelphia and Penn Medicine, Philadelphia, PA, USA
3Department of Psychiatry, University of Pennsylvania, Philadelphia, PA, USA
24Department of Genetics, University of Pennsylvania, Philadelphia, PA, USA
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Aaron F. Alexander-Bloch
1Lifespan Brain Institute, The Children’s Hospital of Philadelphia and Penn Medicine, Philadelphia, PA, USA
2Department of Child and Adolescent Psychiatry and Behavioral Science, The Children’s Hospital of Philadelphia, Philadelphia, PA, USA
3Department of Psychiatry, University of Pennsylvania, Philadelphia, PA, USA
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Abstract

Human brain size increases dynamically through early development, peaks in adolescence, and varies up to two-fold among adults. Although previous studies have elucidated changes in brain size across evolution, development, traits, and diseases, the molecular underpinnings of interindividual variation in brain size remain unknown. Here, we leverage postmortem brain RNA sequencing and estimates of brain weight (BW) in 2,531 individuals across three independent datasets, to identify 928 genes that show genome-wide significant associations with either higher or lower BW (BW+, BW-, respectively). These BW gene sets showed distinct neurodevelopmental trajectories and spatial patterns that mapped onto developmental, functional and cellular axes of brain organization. Expression differences among evolutionarily conserved BW genes were predictive of interspecies differences in brain size, and functional annotation of BW genes revealed enrichment for neurogenesis and cell-cell communication. Genome-wide, transcriptome-wide, and phenome-wide association analyses of in vivo neuroimaging phenotypes confirmed that the genetic regulation of BW-transcripts influences cortical surface area and volume, as well as behavioral traits related to brain function and disease. Cumulatively, our study represents a major step towards the goal of delineating the causal mechanisms of human brain size variation in health and disease.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵21 See Supplemental Information

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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The molecular genetic landscape of human brain size variation
Jakob Seidlitz, Travis T. Mallard, Jacob W. Vogel, Younga H. Lee, Varun Warrier, Gareth Ball, Oskar Hansson, Leanna M. Hernandez, Ayan S. Mandal, Konrad Wagstyl, Michael V. Lombardo, Eric Courchesne, Joseph T. Glessner, Theodore D. Satterthwaite, Richard A.I. Bethlehem, Lifespan Brain Chart Consortium, Shinya Tasaki, Bernard Ng, Chris Gaiteri, Jordan W. Smoller, Tian Ge, Michael J. Gandal, Aaron F. Alexander-Bloch
bioRxiv 2022.11.03.514996; doi: https://doi.org/10.1101/2022.11.03.514996
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The molecular genetic landscape of human brain size variation
Jakob Seidlitz, Travis T. Mallard, Jacob W. Vogel, Younga H. Lee, Varun Warrier, Gareth Ball, Oskar Hansson, Leanna M. Hernandez, Ayan S. Mandal, Konrad Wagstyl, Michael V. Lombardo, Eric Courchesne, Joseph T. Glessner, Theodore D. Satterthwaite, Richard A.I. Bethlehem, Lifespan Brain Chart Consortium, Shinya Tasaki, Bernard Ng, Chris Gaiteri, Jordan W. Smoller, Tian Ge, Michael J. Gandal, Aaron F. Alexander-Bloch
bioRxiv 2022.11.03.514996; doi: https://doi.org/10.1101/2022.11.03.514996

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