Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

A-SOiD, an active learning platform for expert-guided, data efficient discovery of behavior

View ORCID ProfileJens F. Schweihoff, View ORCID ProfileAlexander I. Hsu, View ORCID ProfileMartin K. Schwarz, View ORCID ProfileEric A. Yttri
doi: https://doi.org/10.1101/2022.11.04.515138
Jens F. Schweihoff
1Functional Neuroconnectomics Group, Institute of Experimental Epileptology and Cognition Research, Medical Faculty, University of Bonn, Bonn, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Jens F. Schweihoff
Alexander I. Hsu
2Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Alexander I. Hsu
Martin K. Schwarz
1Functional Neuroconnectomics Group, Institute of Experimental Epileptology and Cognition Research, Medical Faculty, University of Bonn, Bonn, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Martin K. Schwarz
  • For correspondence: eyttri@andrew.cmu.edu Martin.Schwarz@ukbonn.de
Eric A. Yttri
2Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA USA
3Neuroscience Institute, Carnegie Mellon University, Pittsburgh, PA USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Eric A. Yttri
  • For correspondence: eyttri@andrew.cmu.edu Martin.Schwarz@ukbonn.de
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Data/Code
  • Preview PDF
Loading

Abstract

Behavior identification and quantification techniques have undergone rapid development. To this end, supervised or unsupervised methods are chosen based upon their intrinsic strengths and weaknesses (e.g. user bias, training cost, complexity, action discovery). Here, a new active learning platform, A-SOiD, blends these strengths and in doing so, overcomes several of their inherent drawbacks. A-SOiD iteratively learns user-defined groups with a fraction of the usual training data while attaining expansive classification through directed unsupervised classification. In socially-interacting mice, A-SOiD outperformed standard methods despite requiring 85% less training data. Additionally, it isolated two additional ethologically-distinct mouse interactions via unsupervised classification. Similar performance and efficiency was observed using non-human primate 3D pose data. In both cases, the transparency in A-SOiD’s cluster definitions revealed the defining features of the supervised classification through a game-theoretic approach. To facilitate use, A-SOiD comes as an intuitive, open-source interface for efficient segmentation of user-defined behaviors and discovered subactions.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • The acknowledgments, method section, and references were revised to reflect the correct information about the authorship of the non-human primate data used in this study.

  • https://github.com/YttriLab/A-SOID

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Back to top
PreviousNext
Posted November 08, 2022.
Download PDF

Supplementary Material

Data/Code
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
A-SOiD, an active learning platform for expert-guided, data efficient discovery of behavior
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
A-SOiD, an active learning platform for expert-guided, data efficient discovery of behavior
Jens F. Schweihoff, Alexander I. Hsu, Martin K. Schwarz, Eric A. Yttri
bioRxiv 2022.11.04.515138; doi: https://doi.org/10.1101/2022.11.04.515138
Reddit logo Twitter logo Facebook logo LinkedIn logo Mendeley logo
Citation Tools
A-SOiD, an active learning platform for expert-guided, data efficient discovery of behavior
Jens F. Schweihoff, Alexander I. Hsu, Martin K. Schwarz, Eric A. Yttri
bioRxiv 2022.11.04.515138; doi: https://doi.org/10.1101/2022.11.04.515138

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Animal Behavior and Cognition
Subject Areas
All Articles
  • Animal Behavior and Cognition (4229)
  • Biochemistry (9118)
  • Bioengineering (6753)
  • Bioinformatics (23948)
  • Biophysics (12103)
  • Cancer Biology (9498)
  • Cell Biology (13745)
  • Clinical Trials (138)
  • Developmental Biology (7618)
  • Ecology (11664)
  • Epidemiology (2066)
  • Evolutionary Biology (15479)
  • Genetics (10621)
  • Genomics (14297)
  • Immunology (9468)
  • Microbiology (22808)
  • Molecular Biology (9083)
  • Neuroscience (48895)
  • Paleontology (355)
  • Pathology (1479)
  • Pharmacology and Toxicology (2566)
  • Physiology (3826)
  • Plant Biology (8309)
  • Scientific Communication and Education (1467)
  • Synthetic Biology (2294)
  • Systems Biology (6172)
  • Zoology (1297)