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Enrichment of charge-absent regions in phase separated proteins

Sonia T. Nicolaou, Chandra S. Verma, Jim Warwicker
doi: https://doi.org/10.1101/2022.11.05.515309
Sonia T. Nicolaou
1School of Biological Sciences, Faculty of Biology, Medicine and Health, Manchester Institute of Biotechnology, University of Manchester, Manchester M1 7DN, UK
2Bioinformatics Institute, Agency for Science, Technology, and Research (A*STAR)
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Chandra S. Verma
2Bioinformatics Institute, Agency for Science, Technology, and Research (A*STAR)
3School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551
4Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, Singapore 117543
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Jim Warwicker
1School of Biological Sciences, Faculty of Biology, Medicine and Health, Manchester Institute of Biotechnology, University of Manchester, Manchester M1 7DN, UK
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  • For correspondence: jim.warwicker@manchester.ac.uk
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Abstract

Many studies focus on the relationship between protein charge and liquid-liquid phase separation (LLPS), generally finding that a large degree of charge neutralisation is involved for condensate formation. Here, sequences within human proteins that lack the charge-bearing residues Asp, Glu, Lys, and Arg (termed charge-absent) are analysed alongside annotation for involvement in LLPS. Scaffold proteins, central to condensate formation, on average possess longer charge-absent regions than those not key for LLPS. Charge-absent regions tend to have relatively high hydropathy scores. Overall, they are enriched in Ala, Gly, Pro, and Ser with more specific groupings evident when the subset is clustered by amino acid composition. For several proteins, segments with charge-absent regions have been identified as modulators of LLPS. It is hypothesised that for at least some of the charge-absent regions, a lack of charged group desolvation energy, together with a relatively hydrophobic sequence composition, may facilitate condensation through homomeric interactions. If this is the case, it should be relatively easy to modulate through incorporation of charge through engineering, potentially including pH-sensing.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted November 06, 2022.
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Enrichment of charge-absent regions in phase separated proteins
Sonia T. Nicolaou, Chandra S. Verma, Jim Warwicker
bioRxiv 2022.11.05.515309; doi: https://doi.org/10.1101/2022.11.05.515309
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Enrichment of charge-absent regions in phase separated proteins
Sonia T. Nicolaou, Chandra S. Verma, Jim Warwicker
bioRxiv 2022.11.05.515309; doi: https://doi.org/10.1101/2022.11.05.515309

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