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Hydrodynamic and anthropogenic disturbances co-shape microbiota rhythmicity and community assembly within intertidal groundwater-surface water continuum

View ORCID ProfileZe Zhao, Lu Zhang, Guoqing Zhang, Han Gao, Xiaogang Chen, Ling Li, Feng Ju
doi: https://doi.org/10.1101/2022.11.06.515374
Ze Zhao
1College of Environmental & Resources Sciences, Zhejiang University, Hangzhou 310058, China
2Key Laboratory of Coastal Environment and Resources of Zhejiang Province, School of Engineering, Westlake University, Hangzhou 310030, Zhejiang Province, China
3Institute of Advanced Technology, Westlake Institute for Advanced Study, 18 Shilongshan Road, Hangzhou, Zhejiang 310024, China
4Center of Synthetic Biology and Integrated Bioengineering, Westlake University, Hangzhou, Zhejiang 310030, China
5Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou, Zhejiang Province, China
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  • ORCID record for Ze Zhao
Lu Zhang
2Key Laboratory of Coastal Environment and Resources of Zhejiang Province, School of Engineering, Westlake University, Hangzhou 310030, Zhejiang Province, China
3Institute of Advanced Technology, Westlake Institute for Advanced Study, 18 Shilongshan Road, Hangzhou, Zhejiang 310024, China
4Center of Synthetic Biology and Integrated Bioengineering, Westlake University, Hangzhou, Zhejiang 310030, China
5Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou, Zhejiang Province, China
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Guoqing Zhang
2Key Laboratory of Coastal Environment and Resources of Zhejiang Province, School of Engineering, Westlake University, Hangzhou 310030, Zhejiang Province, China
3Institute of Advanced Technology, Westlake Institute for Advanced Study, 18 Shilongshan Road, Hangzhou, Zhejiang 310024, China
4Center of Synthetic Biology and Integrated Bioengineering, Westlake University, Hangzhou, Zhejiang 310030, China
5Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou, Zhejiang Province, China
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Han Gao
2Key Laboratory of Coastal Environment and Resources of Zhejiang Province, School of Engineering, Westlake University, Hangzhou 310030, Zhejiang Province, China
3Institute of Advanced Technology, Westlake Institute for Advanced Study, 18 Shilongshan Road, Hangzhou, Zhejiang 310024, China
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Xiaogang Chen
2Key Laboratory of Coastal Environment and Resources of Zhejiang Province, School of Engineering, Westlake University, Hangzhou 310030, Zhejiang Province, China
3Institute of Advanced Technology, Westlake Institute for Advanced Study, 18 Shilongshan Road, Hangzhou, Zhejiang 310024, China
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Ling Li
2Key Laboratory of Coastal Environment and Resources of Zhejiang Province, School of Engineering, Westlake University, Hangzhou 310030, Zhejiang Province, China
3Institute of Advanced Technology, Westlake Institute for Advanced Study, 18 Shilongshan Road, Hangzhou, Zhejiang 310024, China
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Feng Ju
2Key Laboratory of Coastal Environment and Resources of Zhejiang Province, School of Engineering, Westlake University, Hangzhou 310030, Zhejiang Province, China
3Institute of Advanced Technology, Westlake Institute for Advanced Study, 18 Shilongshan Road, Hangzhou, Zhejiang 310024, China
4Center of Synthetic Biology and Integrated Bioengineering, Westlake University, Hangzhou, Zhejiang 310030, China
5Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou, Zhejiang Province, China
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  • For correspondence: jufeng@westlake.edu.cn
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Abstract

Tidal hydrodynamics drive the groundwater-seawater exchange and shifts in microbiota structure in the coastal zone. However, how the coastal water microbiota structure and assembly patterns respond to periodic tidal fluctuations and anthropogenic disturbance remain unexplored in the intertidal groundwater-surface water (GW-SW) continuum, although it affects biogeochemical cycles and coastal water quality therein. Here, through hourly time-series sampling in the saltmarsh tidal creek, rhythmic patterns of microbiota structure in response to daily and monthly tidal fluctuations in intertidal surface water are disentangled for the first time. The similarity in archaeal community structures between groundwater and ebb-tide surface water (R2=0.06, p=0.2) demonstrated archaeal transport through groundwater discharge, whereas multi-source transport mechanisms led to unique bacterial biota in ebb-tide water. Homogeneous selection (58.6%-69.3%) dominated microbiota assembly in the natural intertidal GW-SW continuum and the presence of 157 rhythmic ASVs identified at ebb tide and 141 at flood tide could be attributed to different environmental selection between groundwater and seawater. For intertidal groundwater in the tidal creek affected by anthropogenically contaminated riverine inputs, higher microbial diversity and shift in community structure were primarily controlled by increased co-contribution of dispersal limitation and drift (jointly 57.8%) and enhanced microbial interactions. Overall, this study fills the knowledge gaps in the tide-driven water microbial dynamics in coastal transition zone and the response of intertidal groundwater microbiota to anthropogenic pollution of overlying waters. It also highlights the potential of microbiome analysis in enhancing coastal water quality monitoring and identifying anthropogenic pollution sources (e.g., aquaculture pathogenic Vibrio) through the detection of rhythmic microbial variances associated with intertidal groundwater discharge and seawater intrusion.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • Section 3.2 on Microbiota rhythm patterns updated to clarify the identification of rhythmic ASVs in NTS-Neap and NTS-Spring, respectively; Figure 3 revised; Section of discussion updated.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted May 25, 2023.
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Hydrodynamic and anthropogenic disturbances co-shape microbiota rhythmicity and community assembly within intertidal groundwater-surface water continuum
Ze Zhao, Lu Zhang, Guoqing Zhang, Han Gao, Xiaogang Chen, Ling Li, Feng Ju
bioRxiv 2022.11.06.515374; doi: https://doi.org/10.1101/2022.11.06.515374
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Hydrodynamic and anthropogenic disturbances co-shape microbiota rhythmicity and community assembly within intertidal groundwater-surface water continuum
Ze Zhao, Lu Zhang, Guoqing Zhang, Han Gao, Xiaogang Chen, Ling Li, Feng Ju
bioRxiv 2022.11.06.515374; doi: https://doi.org/10.1101/2022.11.06.515374

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