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A rapid platform for 3D patient-derived cutaneous neurofibroma organoid establishment and screening

Huyen Thi Lam Nguyen, Emily Kohl, View ORCID ProfileJessica Bade, View ORCID ProfileStefan E. Eng, View ORCID ProfileAnela Tosevska, View ORCID ProfileAhmad Al Shihabi, Jenny J. Hong, View ORCID ProfileSarah Dry, View ORCID ProfilePaul C. Boutros, Andre Panossian, View ORCID ProfileSara Gosline, View ORCID ProfileAlice Soragni
doi: https://doi.org/10.1101/2022.11.07.515469
Huyen Thi Lam Nguyen
1Department of Orthopaedic Surgery, David Geffen School of Medicine, University of California Los Angeles, CA, USA
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Emily Kohl
1Department of Orthopaedic Surgery, David Geffen School of Medicine, University of California Los Angeles, CA, USA
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Jessica Bade
2Pacific Northwest National Laboratories, Seattle, WA, USA
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Stefan E. Eng
3Department of Human Genetics, University of California Los Angeles, CA, USA
7Institute for Precision Health, University of California Los Angeles, CA, USA
9Jonsson Comprehensive Cancer Center, University of California Los Angeles, Los Angeles, CA, USA
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Anela Tosevska
4Department of Molecular, Cell and Developmental Biology, University of California Los Angeles, CA, USA
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Ahmad Al Shihabi
5Department of Pathology, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA
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Jenny J. Hong
6Division of Hematology-Oncology, David Geffen School of Medicine, University of California Los Angeles, CA, USA
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Sarah Dry
5Department of Pathology, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA
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Paul C. Boutros
3Department of Human Genetics, University of California Los Angeles, CA, USA
7Institute for Precision Health, University of California Los Angeles, CA, USA
8Department of Urology, University of California Los Angeles, CA, USA
9Jonsson Comprehensive Cancer Center, University of California Los Angeles, Los Angeles, CA, USA
10Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research, University of California Los Angeles, CA
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Andre Panossian
11Panossian Plastic Surgery, Pasadena, CA, USA
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Sara Gosline
2Pacific Northwest National Laboratories, Seattle, WA, USA
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  • For correspondence: sara.gosline@pnnl.gov alices@mednet.ucla.edu
Alice Soragni
1Department of Orthopaedic Surgery, David Geffen School of Medicine, University of California Los Angeles, CA, USA
9Jonsson Comprehensive Cancer Center, University of California Los Angeles, Los Angeles, CA, USA
10Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research, University of California Los Angeles, CA
12California NanoSystems Institute, University of California Los Angeles, CA, USA
13Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA, USA
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  • For correspondence: sara.gosline@pnnl.gov alices@mednet.ucla.edu
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Abstract

Localized cutaneous neurofibromas (cNFs) are benign tumors that arise in the dermis of patients affected by Neurofibromatosis Type 1 syndrome (NF1). cNFs are fundamentally benign lesions: they do not undergo malignant transformation or metastasize. Nevertheless, in NF1 patients, they can cover a significant proportion of the body, with some individuals developing hundreds to thousands of lesions. cNFs can cause pain, itching, and disfigurement with substantial socio-emotional repercussions. To date, surgical removal or laser desiccation are the only treatment options, but can result in scarring and the leave a potential for regrowth.

To support drug discovery efforts focused on identifying effective systemic therapies for cNF, we introduce an approach to routinely establish and screen cNF tumor organoids. We optimized conditions to support ex vivo growth of genomically-diverse cNFs. Patient-derived cNF organoids closely recapitulate the molecular and cellular heterogeneity of these tumors as measured by immunohistopathology, DNA methylation, RNA-seq and flow cytometry. Our tractable patient-derived cNF organoid platform enables rapid screening of hundreds of compounds in a patient- and tumor-specific manner.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted November 07, 2022.
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A rapid platform for 3D patient-derived cutaneous neurofibroma organoid establishment and screening
Huyen Thi Lam Nguyen, Emily Kohl, Jessica Bade, Stefan E. Eng, Anela Tosevska, Ahmad Al Shihabi, Jenny J. Hong, Sarah Dry, Paul C. Boutros, Andre Panossian, Sara Gosline, Alice Soragni
bioRxiv 2022.11.07.515469; doi: https://doi.org/10.1101/2022.11.07.515469
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A rapid platform for 3D patient-derived cutaneous neurofibroma organoid establishment and screening
Huyen Thi Lam Nguyen, Emily Kohl, Jessica Bade, Stefan E. Eng, Anela Tosevska, Ahmad Al Shihabi, Jenny J. Hong, Sarah Dry, Paul C. Boutros, Andre Panossian, Sara Gosline, Alice Soragni
bioRxiv 2022.11.07.515469; doi: https://doi.org/10.1101/2022.11.07.515469

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