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A nematode model to evaluate microdeletion phenotype expression

Katianna R. Antkowiak, Peren Coskun, Sharon T. Noronha, Davide Tavella, Francesca Massi, View ORCID ProfileSean P. Ryder
doi: https://doi.org/10.1101/2022.11.09.515676
Katianna R. Antkowiak
aDepartment of Biochemistry and Molecular Biotechnology, University of Massachusetts Chan Medical School, Worcester, MA
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Peren Coskun
aDepartment of Biochemistry and Molecular Biotechnology, University of Massachusetts Chan Medical School, Worcester, MA
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Sharon T. Noronha
aDepartment of Biochemistry and Molecular Biotechnology, University of Massachusetts Chan Medical School, Worcester, MA
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Davide Tavella
aDepartment of Biochemistry and Molecular Biotechnology, University of Massachusetts Chan Medical School, Worcester, MA
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Francesca Massi
aDepartment of Biochemistry and Molecular Biotechnology, University of Massachusetts Chan Medical School, Worcester, MA
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Sean P. Ryder
aDepartment of Biochemistry and Molecular Biotechnology, University of Massachusetts Chan Medical School, Worcester, MA
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  • ORCID record for Sean P. Ryder
  • For correspondence: Sean.Ryder@umassmed.edu
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ABSTRACT

Microdeletion syndromes are genetic diseases caused by chromosomal deletions too small to be detected by karyotyping. They are typified by complex pleiotropic developmental phenotypes that depend both on the extent of the deletion and variations in genetic background. Microdeletion alleles disrupt several genes simultaneously, often as the result of a single mutagenic event, causing a wide array of consequences across multiple systems involving multiple pathways. How simultaneous haploinsufficiency of numerous adjacent genes leads to complex and variable pleiotropic phenotypes is not well understood. CRISPR/Cas9 genome editing has been shown to induce microdeletion-like alleles at a meaningful rate. Here, we describe a microdeletion allele in Caenorhabditis elegans recovered during a CRISPR/Cas9 genome editing experiment. We mapped the allele to chromosome V, balanced it with a reciprocal translocation crossover suppressor, and precisely defined the breakpoint junction. The allele simultaneously removes 32 protein-coding genes, yet animals homozygous for this mutation are viable as adults. Homozygous animals display a complex phenotype including maternal effect lethality, producing polynucleated embryos that grow into uterine tumors, vulva morphogenesis defects, body wall distensions, uncoordinated movement, and a shortened life span typified by death by bursting. Our work provides an opportunity to explore the complexity and penetrance of microdeletion phenotypes in a simple genetic model system.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://www.ncbi.nlm.nih.gov/sra/PRJNA899542

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted November 09, 2022.
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A nematode model to evaluate microdeletion phenotype expression
Katianna R. Antkowiak, Peren Coskun, Sharon T. Noronha, Davide Tavella, Francesca Massi, Sean P. Ryder
bioRxiv 2022.11.09.515676; doi: https://doi.org/10.1101/2022.11.09.515676
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A nematode model to evaluate microdeletion phenotype expression
Katianna R. Antkowiak, Peren Coskun, Sharon T. Noronha, Davide Tavella, Francesca Massi, Sean P. Ryder
bioRxiv 2022.11.09.515676; doi: https://doi.org/10.1101/2022.11.09.515676

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