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A physiologically based model of bile acid metabolism in mice

Bastian Kister, Alina Viehof, Ulrike Rolle-Kampczyk, Annika Schwentker, Nicole Simone Treichel, Susan Jennings, Theresa H. Wirtz, Lars M. Blank, Mathias W. Hornef, Martin von Bergen, Thomas Clavel, View ORCID ProfileLars Kuepfer
doi: https://doi.org/10.1101/2022.11.10.515857
Bastian Kister
1Institute for Systems Medicine with Focus on Organ Interaction, University Hospital RWTH Aachen, Aachen, Germany
2Institute of Applied Microbiology, RWTH Aachen, Aachen, Germany
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Alina Viehof
3Functional Microbiome Research Group, Institute of Medical Microbiology, University Hospital RWTH Aachen, Aachen, Germany
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Ulrike Rolle-Kampczyk
4Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research (UFZ), Leipzig, Germany
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Annika Schwentker
5Institute of Medical Microbiology, University Hospital RWTH Aachen, Aachen, Germany
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Nicole Simone Treichel
3Functional Microbiome Research Group, Institute of Medical Microbiology, University Hospital RWTH Aachen, Aachen, Germany
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Susan Jennings
3Functional Microbiome Research Group, Institute of Medical Microbiology, University Hospital RWTH Aachen, Aachen, Germany
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Theresa H. Wirtz
6Department of Medicine III, University Hospital RWTH Aachen, Aachen, Germany
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Lars M. Blank
2Institute of Applied Microbiology, RWTH Aachen, Aachen, Germany
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Mathias W. Hornef
5Institute of Medical Microbiology, University Hospital RWTH Aachen, Aachen, Germany
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Martin von Bergen
4Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research (UFZ), Leipzig, Germany
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Thomas Clavel
3Functional Microbiome Research Group, Institute of Medical Microbiology, University Hospital RWTH Aachen, Aachen, Germany
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Lars Kuepfer
1Institute for Systems Medicine with Focus on Organ Interaction, University Hospital RWTH Aachen, Aachen, Germany
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  • ORCID record for Lars Kuepfer
  • For correspondence: lkuepfer@ukaachen.de
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Abstract

Bile acid (BA) metabolism is a complex system that encompasses a diverse mixture of primary and secondary, as well as conjugated and unconjugated BAs that undergo continuous enterohepatic circulation (EHC). Alterations in both composition and dynamics of BAs have been associated with various diseases; however, a mechanistic understanding of the relationship between altered BAs metabolism and related diseases is lacking. Computational modeling may support functional analyses of the physiological processes involved in the EHC of bile acids along gut the gut-liver axis. In this study, we developed a physiology-based model of murine BA metabolism describing synthesis, conjugation, microbial transformations, systemic distribution, excretion and EHC of BAs as well as an explicit representation of the host physiology at the whole-body level. For model development, BA metabolism of specific pathogen-free (SPF) was characterized in vivo by measuring BA levels and composition in various organs, expression of transporters along the gut and cecal microbiota composition. Interestingly, We found significantly different BA levels between male and female mice that could only be explained by adjusted expression of the hepatic enzymes and transporters in the model. Of note, this finding was in agreement with earlier experimental observations. The model for SPF mice could also describe equivalent experimental data in germ-free mice by specifically switching of microbial activity in the intestine. The here presented model hence allows functional analysis of BA metabolism in mice. In the future, the model may support the translation of results from mouse studies to a clinically relevant context through cross-species extrapolation.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted November 13, 2022.
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A physiologically based model of bile acid metabolism in mice
Bastian Kister, Alina Viehof, Ulrike Rolle-Kampczyk, Annika Schwentker, Nicole Simone Treichel, Susan Jennings, Theresa H. Wirtz, Lars M. Blank, Mathias W. Hornef, Martin von Bergen, Thomas Clavel, Lars Kuepfer
bioRxiv 2022.11.10.515857; doi: https://doi.org/10.1101/2022.11.10.515857
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A physiologically based model of bile acid metabolism in mice
Bastian Kister, Alina Viehof, Ulrike Rolle-Kampczyk, Annika Schwentker, Nicole Simone Treichel, Susan Jennings, Theresa H. Wirtz, Lars M. Blank, Mathias W. Hornef, Martin von Bergen, Thomas Clavel, Lars Kuepfer
bioRxiv 2022.11.10.515857; doi: https://doi.org/10.1101/2022.11.10.515857

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