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An update on eukaryotic viruses revived from ancient permafrost

Jean-Marie Alempic, Audrey Lartigue, Artemiy E Goncharov, Guido Grosse, Jens Strauss, Alexey N. Tikhonov, Alexander N. Fedorov, Olivier Poirot, Matthieu Legendre, Sébastien Santini, Chantal Abergel, View ORCID ProfileJean-Michel Claverie
doi: https://doi.org/10.1101/2022.11.10.515937
Jean-Marie Alempic
1IGS, Information Génomique & Structurale (UMR7256), Institut de Microbiologie de la Méditerranée (FR 3489), Institut Microbiologie, Bioénergies et Biotechnologie, and Institut Origines, CNRS, Aix Marseille University, Marseille, 13288, France
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Audrey Lartigue
1IGS, Information Génomique & Structurale (UMR7256), Institut de Microbiologie de la Méditerranée (FR 3489), Institut Microbiologie, Bioénergies et Biotechnologie, and Institut Origines, CNRS, Aix Marseille University, Marseille, 13288, France
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Artemiy E Goncharov
2Department of Molecular Microbiology, Institute of Experimental Medicine, Saint Petersburg, Russia, Department of Epidemiology, Parasitology and Disinfectology, Northwestern State Medical Mechnikov University, Saint Petersburg, 195067, Russia
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Guido Grosse
3Permafrost Research Section, Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, 14473, Potsdam, Germany
4Institute of Geosciences, University of Potsdam, 14478 Potsdam, Germany
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Jens Strauss
3Permafrost Research Section, Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, 14473, Potsdam, Germany
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Alexey N. Tikhonov
5Laboratory of theriology, Zoological Institute of Russian Academy of Science, St. Petersburg, 199034, Russia
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Alexander N. Fedorov
6Melnikov Permafrost Institute, 677010 Yakutsk, Russia
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Olivier Poirot
1IGS, Information Génomique & Structurale (UMR7256), Institut de Microbiologie de la Méditerranée (FR 3489), Institut Microbiologie, Bioénergies et Biotechnologie, and Institut Origines, CNRS, Aix Marseille University, Marseille, 13288, France
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Matthieu Legendre
1IGS, Information Génomique & Structurale (UMR7256), Institut de Microbiologie de la Méditerranée (FR 3489), Institut Microbiologie, Bioénergies et Biotechnologie, and Institut Origines, CNRS, Aix Marseille University, Marseille, 13288, France
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Sébastien Santini
1IGS, Information Génomique & Structurale (UMR7256), Institut de Microbiologie de la Méditerranée (FR 3489), Institut Microbiologie, Bioénergies et Biotechnologie, and Institut Origines, CNRS, Aix Marseille University, Marseille, 13288, France
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Chantal Abergel
1IGS, Information Génomique & Structurale (UMR7256), Institut de Microbiologie de la Méditerranée (FR 3489), Institut Microbiologie, Bioénergies et Biotechnologie, and Institut Origines, CNRS, Aix Marseille University, Marseille, 13288, France
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Jean-Michel Claverie
1IGS, Information Génomique & Structurale (UMR7256), Institut de Microbiologie de la Méditerranée (FR 3489), Institut Microbiologie, Bioénergies et Biotechnologie, and Institut Origines, CNRS, Aix Marseille University, Marseille, 13288, France
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  • ORCID record for Jean-Michel Claverie
  • For correspondence: Jean-Michel.Claverie@univ-amu.fr
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Abstract

One quarter of the Northern hemisphere is underlain by permanently frozen ground, referred to as permafrost. Due to climate warming, irreversibly thawing permafrost is releasing organic matter frozen for up to a million years, most of which decomposes into carbon dioxide and methane, further enhancing the greenhouse effect. Part of this organic matter also consists of revived cellular microbes (prokaryotes, unicellular eukaryotes) as well as viruses that remained dormant since prehistorical times. While the literature abounds on descriptions of the rich and diverse prokaryotic microbiomes found in permafrost, no additional report about “live” viruses have been published since the two original studies describing pithovirus (in 2014) and mollivirus (in 2015). This wrongly suggests that such occurrences are rare and that “zombie viruses” are not a public health threat. To restore an appreciation closer to reality, we report the preliminary characterizations of 13 new viruses isolated from 7 different ancient Siberian permafrost samples, 1 from the Lena river and 1 from Kamchatka cryosol. As expected from the host specificity imposed by our protocol, these viruses belong to 5 different clades infecting Acanthamoeba spp. but not previously revived from permafrost: pandoravirus, cedratvirus, megavirus, and pacmanvirus, in addition to a new pithovirus strain.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted November 10, 2022.
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An update on eukaryotic viruses revived from ancient permafrost
Jean-Marie Alempic, Audrey Lartigue, Artemiy E Goncharov, Guido Grosse, Jens Strauss, Alexey N. Tikhonov, Alexander N. Fedorov, Olivier Poirot, Matthieu Legendre, Sébastien Santini, Chantal Abergel, Jean-Michel Claverie
bioRxiv 2022.11.10.515937; doi: https://doi.org/10.1101/2022.11.10.515937
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An update on eukaryotic viruses revived from ancient permafrost
Jean-Marie Alempic, Audrey Lartigue, Artemiy E Goncharov, Guido Grosse, Jens Strauss, Alexey N. Tikhonov, Alexander N. Fedorov, Olivier Poirot, Matthieu Legendre, Sébastien Santini, Chantal Abergel, Jean-Michel Claverie
bioRxiv 2022.11.10.515937; doi: https://doi.org/10.1101/2022.11.10.515937

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