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The UBP5 histone H2A deubiquitinase counteracts PRC2-mediated repression to regulate Arabidopsis development and stress responses

View ORCID ProfileJames Godwin, Eduardo March, Mohan Govindasamy, Clara Bourbousse, Léa Wolff, Antoine Fort, Michal Krzyszton, Jesús López, Szymon Swiezewski, Fredy Barneche, Daniel Schubert, View ORCID ProfileSara Farrona
doi: https://doi.org/10.1101/2022.11.15.516593
James Godwin
1Plant and Agricultural Biosciences Centre, Ryan Institute, University of Galway, H91 TK33, Galway, Ireland
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Eduardo March
1Plant and Agricultural Biosciences Centre, Ryan Institute, University of Galway, H91 TK33, Galway, Ireland
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Mohan Govindasamy
1Plant and Agricultural Biosciences Centre, Ryan Institute, University of Galway, H91 TK33, Galway, Ireland
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Clara Bourbousse
2Institut de Biologie de l’École Normale Supérieure (IBENS), École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France
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Léa Wolff
2Institut de Biologie de l’École Normale Supérieure (IBENS), École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France
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Antoine Fort
3Dept. of Veterinary and Microbial Sciences, Technological University of The Shannon: Midlands, Athlone, Co. Roscommon, Ireland
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Michal Krzyszton
4Laboratory of Seeds Molecular Biology, Institute of Biochemistry and Biophysics, PAS, Warsaw, 02-106, Poland
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Jesús López
5Molecular Parasitology Laboratory (MPL), Centre for One Health and Ryan Institute, School of Natural Sciences, University of Galway, Galway, H91 DK59, Ireland
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Szymon Swiezewski
4Laboratory of Seeds Molecular Biology, Institute of Biochemistry and Biophysics, PAS, Warsaw, 02-106, Poland
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Fredy Barneche
2Institut de Biologie de l’École Normale Supérieure (IBENS), École Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France
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Daniel Schubert
6Institute of Biology, Freie Universität Berlin, 14195 Berlin, Germany
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Sara Farrona
1Plant and Agricultural Biosciences Centre, Ryan Institute, University of Galway, H91 TK33, Galway, Ireland
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  • ORCID record for Sara Farrona
  • For correspondence: sara.farrona@universityofgalway.ie
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Abstract

Polycomb Repressive Complexes (PRCs) control gene expression through the incorporation of H2Aub and H3K27me3. However, there is limited knowledge about PRCs’ interacting proteins and their interplay with PRCs in epigenome reshaping, which is fundamental to understand gene regulatory mechanisms. Here, we identified UBIQUITIN SPECIFIC PROTEASE 5 (UBP5) as a novel interactor of the PRC2 subunit SWINGER and its associated factor PWO1 in Arabidopsis thaliana. As inferred from the functional analyses of ubp5 CRISPR-Cas9 mutant plants, UBP5 regulates plant development and stress responses, notably by promoting H2A monoubiquitination erasure, leading to transcriptional de-repression. Preferential association of UBP5 at PRC2 recruiting motifs and local H3K27me3 gaining in ubp5 mutant plants further suggest the existence of functional interplays between UBP5 and PRC2 in regulating epigenome dynamics. In summary, UBP5 provides novel insights to disentangle the complex PRC2 interaction network and is a crucial regulator of the pivotal epigenetic repressive marks H2Aub and H3K27me3.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted November 15, 2022.
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The UBP5 histone H2A deubiquitinase counteracts PRC2-mediated repression to regulate Arabidopsis development and stress responses
James Godwin, Eduardo March, Mohan Govindasamy, Clara Bourbousse, Léa Wolff, Antoine Fort, Michal Krzyszton, Jesús López, Szymon Swiezewski, Fredy Barneche, Daniel Schubert, Sara Farrona
bioRxiv 2022.11.15.516593; doi: https://doi.org/10.1101/2022.11.15.516593
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The UBP5 histone H2A deubiquitinase counteracts PRC2-mediated repression to regulate Arabidopsis development and stress responses
James Godwin, Eduardo March, Mohan Govindasamy, Clara Bourbousse, Léa Wolff, Antoine Fort, Michal Krzyszton, Jesús López, Szymon Swiezewski, Fredy Barneche, Daniel Schubert, Sara Farrona
bioRxiv 2022.11.15.516593; doi: https://doi.org/10.1101/2022.11.15.516593

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