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β-Cyclodextrins as affordable antivirals to treat coronavirus infection

Dalia Raïch-Regué, Raquel Tenorio, Isabel Fernández de Castro, Daniel Perez -Zsolt, Jordana Muñoz-Basagoiti, Martin Sachse, Sara Y. Fernández-Sánchez, Marçal Gallemí, Paula Ortega-González, Alberto Fernández-Oliva, José A. Gabaldón, Estrella Nuñez-Delicado, Josefina Casas, Ferran Tarrés, Júlia-Vergara Alert, Joaquim Segalés, Jorge Carillo, Julià Blanco, Bonaventura Clotet Sala, José P. Cerón-Carrasco, View ORCID ProfileNuria Izquierdo-Useros, View ORCID ProfileCristina Risco
doi: https://doi.org/10.1101/2022.11.16.516726
Dalia Raïch-Regué
2IrsiCaixa, Germans Trias i Pujol Research Institute (IGTP), Can Ruti Campus, 08916, Badalona, Spain
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Raquel Tenorio
1Cell Structure Lab, Centro Nacional de Biotecnologia, CNB - CSIC, Campus de Cantoblanco, 28049 Madrid, Spain
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Isabel Fernández de Castro
1Cell Structure Lab, Centro Nacional de Biotecnologia, CNB - CSIC, Campus de Cantoblanco, 28049 Madrid, Spain
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Daniel Perez -Zsolt
2IrsiCaixa, Germans Trias i Pujol Research Institute (IGTP), Can Ruti Campus, 08916, Badalona, Spain
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Jordana Muñoz-Basagoiti
2IrsiCaixa, Germans Trias i Pujol Research Institute (IGTP), Can Ruti Campus, 08916, Badalona, Spain
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Martin Sachse
1Cell Structure Lab, Centro Nacional de Biotecnologia, CNB - CSIC, Campus de Cantoblanco, 28049 Madrid, Spain
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Sara Y. Fernández-Sánchez
1Cell Structure Lab, Centro Nacional de Biotecnologia, CNB - CSIC, Campus de Cantoblanco, 28049 Madrid, Spain
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Marçal Gallemí
2IrsiCaixa, Germans Trias i Pujol Research Institute (IGTP), Can Ruti Campus, 08916, Badalona, Spain
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Paula Ortega-González
1Cell Structure Lab, Centro Nacional de Biotecnologia, CNB - CSIC, Campus de Cantoblanco, 28049 Madrid, Spain
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Alberto Fernández-Oliva
1Cell Structure Lab, Centro Nacional de Biotecnologia, CNB - CSIC, Campus de Cantoblanco, 28049 Madrid, Spain
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José A. Gabaldón
3Reconocimiento y Encapsulación Molecular. Universidad Católica San Antonio de Murcia (UCAM), Campus de los Jerónimos, N° 135, Guadalupe, 30107 Murcia, Spain
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Estrella Nuñez-Delicado
3Reconocimiento y Encapsulación Molecular. Universidad Católica San Antonio de Murcia (UCAM), Campus de los Jerónimos, N° 135, Guadalupe, 30107 Murcia, Spain
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Josefina Casas
4Institut de Química Avançada de Catalunya (IQAC), Barcelona, Spain
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Ferran Tarrés
5IRTA, Centre de Recerca en Sanitat Animal (CReSA, IRTA-UAB), Campus de la UAB, 08193 Bellaterra (Cerdanyola del Vallès), Spain
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Júlia-Vergara Alert
5IRTA, Centre de Recerca en Sanitat Animal (CReSA, IRTA-UAB), Campus de la UAB, 08193 Bellaterra (Cerdanyola del Vallès), Spain
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Joaquim Segalés
6UAB, CReSA (IRTA-UAB), Campus de la UAB, 08193 Bellaterra (Cerdanyola del Vallès), Spain
7Departament de Sanitat i Anatomia Animals, Facultat de Veterinària, UAB, 08193 Bellaterra (Cerdanyola del Vallès), Spain
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Jorge Carillo
2IrsiCaixa, Germans Trias i Pujol Research Institute (IGTP), Can Ruti Campus, 08916, Badalona, Spain
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Julià Blanco
2IrsiCaixa, Germans Trias i Pujol Research Institute (IGTP), Can Ruti Campus, 08916, Badalona, Spain
8University of Vic–Central University of Catalonia (UVic-UCC), 08500 Vic, Spain
9Consorcio Centro de Investigación Biomédica en Red de Enfermedades Infecciosas (CIBERINFEC), Instituto de Salud Carlos III, 28029 Madrid, Spain
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Bonaventura Clotet Sala
2IrsiCaixa, Germans Trias i Pujol Research Institute (IGTP), Can Ruti Campus, 08916, Badalona, Spain
8University of Vic–Central University of Catalonia (UVic-UCC), 08500 Vic, Spain
9Consorcio Centro de Investigación Biomédica en Red de Enfermedades Infecciosas (CIBERINFEC), Instituto de Salud Carlos III, 28029 Madrid, Spain
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José P. Cerón-Carrasco
10Centro Universitario de la Defensa, Universidad Politécnica de Cartagena, C/Coronel López Peña s/n, Base Aérea de San Javier, Santiago de la Ribera, 30720 Murcia, Spain
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  • For correspondence: jose.ceron@cud.upct.es nizquierdo@irsicaixa.es crisco@cnb.csic.es
Nuria Izquierdo-Useros
2IrsiCaixa, Germans Trias i Pujol Research Institute (IGTP), Can Ruti Campus, 08916, Badalona, Spain
9Consorcio Centro de Investigación Biomédica en Red de Enfermedades Infecciosas (CIBERINFEC), Instituto de Salud Carlos III, 28029 Madrid, Spain
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  • ORCID record for Nuria Izquierdo-Useros
  • For correspondence: jose.ceron@cud.upct.es nizquierdo@irsicaixa.es crisco@cnb.csic.es
Cristina Risco
1Cell Structure Lab, Centro Nacional de Biotecnologia, CNB - CSIC, Campus de Cantoblanco, 28049 Madrid, Spain
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  • ORCID record for Cristina Risco
  • For correspondence: jose.ceron@cud.upct.es nizquierdo@irsicaixa.es crisco@cnb.csic.es
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Abstract

The SARS-CoV-2 pandemic made evident that we count with few coronavirus-fighting drugs. Here we aimed to identify a cost-effective antiviral with broad spectrum activity and high safety and tolerability profiles. We began elaborating a list of 116 drugs previously used to treat other pathologies or characterized in pre-clinical studies with potential to treat coronavirus infections. We next employed molecular modelling tools to rank the 44 most promising inhibitors and tested their efficacy as antivirals against a panel of α and β coronavirus, e.g., the HCoV-229E and SARS-CoV-2 viruses. Four drugs, OSW-1, U18666A, hydroxypropyl-β-cyclodextrin (HβCD) and phytol, showed antiviral activity against both HCoV-229E (in MRC5 cells) and SARS-CoV-2 (in Vero E6 cells). The mechanism of action of these compounds was studied by transmission electron microscopy (TEM) and by testing their capacity to inhibit the entry of SARS-CoV-2 pseudoviruses in ACE2-expressing HEK-293T cells. The entry was inhibited by HβCD and U18666A, yet only HβCD could inhibit SARS-CoV-2 replication in the pulmonary cells Calu-3. With these results and given that cyclodextrins are widely used for drug encapsulation and can be safely administered to humans, we further tested 6 native and modified cyclodextrins, which confirmed β-cyclodextrins as the most potent inhibitors of SARS-CoV-2 replication in Calu-3 cells. All accumulated data points to β-cyclodextrins as promising candidates to be used in the therapeutic treatments for SARS-CoV-2 and possibly other respiratory viruses.

Competing Interest Statement

CR, IFC, MS, PO-G, AF-O, SF-S, NI-U, DP-Z, JM-B, DR-R, JPC-C, JAG and EN-D are inventors of a patent application for use of cyclodextrins to treat viral infection (US 63/323,091). The authors declare no other related competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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β-Cyclodextrins as affordable antivirals to treat coronavirus infection
Dalia Raïch-Regué, Raquel Tenorio, Isabel Fernández de Castro, Daniel Perez -Zsolt, Jordana Muñoz-Basagoiti, Martin Sachse, Sara Y. Fernández-Sánchez, Marçal Gallemí, Paula Ortega-González, Alberto Fernández-Oliva, José A. Gabaldón, Estrella Nuñez-Delicado, Josefina Casas, Ferran Tarrés, Júlia-Vergara Alert, Joaquim Segalés, Jorge Carillo, Julià Blanco, Bonaventura Clotet Sala, José P. Cerón-Carrasco, Nuria Izquierdo-Useros, Cristina Risco
bioRxiv 2022.11.16.516726; doi: https://doi.org/10.1101/2022.11.16.516726
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β-Cyclodextrins as affordable antivirals to treat coronavirus infection
Dalia Raïch-Regué, Raquel Tenorio, Isabel Fernández de Castro, Daniel Perez -Zsolt, Jordana Muñoz-Basagoiti, Martin Sachse, Sara Y. Fernández-Sánchez, Marçal Gallemí, Paula Ortega-González, Alberto Fernández-Oliva, José A. Gabaldón, Estrella Nuñez-Delicado, Josefina Casas, Ferran Tarrés, Júlia-Vergara Alert, Joaquim Segalés, Jorge Carillo, Julià Blanco, Bonaventura Clotet Sala, José P. Cerón-Carrasco, Nuria Izquierdo-Useros, Cristina Risco
bioRxiv 2022.11.16.516726; doi: https://doi.org/10.1101/2022.11.16.516726

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