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Pioneer factor Pax7 initiates two-step cell-cycle dependent chromatin opening

View ORCID ProfileArthur Gouhier, Justine Dumoulin-Gagnon, Vincent Lapointe-Roberge, View ORCID ProfileAurelio Balsalobre, View ORCID ProfileJacques Drouin
doi: https://doi.org/10.1101/2022.11.16.516735
Arthur Gouhier
1Laboratoire de génétique moléculaire, Institut de recherches cliniques de Montréal (IRCM) Montréal, Québec, H2W 1R7 Canada
2Department of Biochemistry, McGill University, Montreal, Quebec, Canada
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  • ORCID record for Arthur Gouhier
Justine Dumoulin-Gagnon
1Laboratoire de génétique moléculaire, Institut de recherches cliniques de Montréal (IRCM) Montréal, Québec, H2W 1R7 Canada
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Vincent Lapointe-Roberge
1Laboratoire de génétique moléculaire, Institut de recherches cliniques de Montréal (IRCM) Montréal, Québec, H2W 1R7 Canada
2Department of Biochemistry, McGill University, Montreal, Quebec, Canada
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Aurelio Balsalobre
1Laboratoire de génétique moléculaire, Institut de recherches cliniques de Montréal (IRCM) Montréal, Québec, H2W 1R7 Canada
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Jacques Drouin
1Laboratoire de génétique moléculaire, Institut de recherches cliniques de Montréal (IRCM) Montréal, Québec, H2W 1R7 Canada
2Department of Biochemistry, McGill University, Montreal, Quebec, Canada
3Département de Biochimie, Université de Montréal, Montréal, Québec, Canada
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  • For correspondence: jacques.drouin@ircm.qc.ca
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Summary

Pioneer transcription factors direct cell differentiation by deploying new enhancer repertoires through their unique ability to target and initiate remodelling of closed chromatin. The initial steps of their action remain undefined although pioneers were shown to interact with nucleosomal target DNA and with some chromatin remodelling complexes. We now define the sequence of events that provide pioneers with their unique abilities. Chromatin condensation exerted by linker histone H1 is the first constraint on pioneer recruitment, and this establishes the initial speed of chromatin remodelling. The first step of pioneer action involves recruitment of the LSD1 H3K9me2 demethylase for removal of this repressive mark, as well as recruitment of the MLL complex for deposition of the H3K4me1 mark. Further progression of pioneer action requires passage through cell division, and this involves dissociation of pioneer targets from perinuclear lamins. Only then, the SWI/SNF remodeling complex and the coactivator p300 are recruited, leading to nucleosome displacement and enhancer activation. Thus, the unique features of pioneer actions are those occurring in the lamin-associated compartment of the nucleus. This model is consistent with much prior work that showed a dependence on cell division for establishment of new cell fates.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted November 16, 2022.
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Pioneer factor Pax7 initiates two-step cell-cycle dependent chromatin opening
Arthur Gouhier, Justine Dumoulin-Gagnon, Vincent Lapointe-Roberge, Aurelio Balsalobre, Jacques Drouin
bioRxiv 2022.11.16.516735; doi: https://doi.org/10.1101/2022.11.16.516735
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Pioneer factor Pax7 initiates two-step cell-cycle dependent chromatin opening
Arthur Gouhier, Justine Dumoulin-Gagnon, Vincent Lapointe-Roberge, Aurelio Balsalobre, Jacques Drouin
bioRxiv 2022.11.16.516735; doi: https://doi.org/10.1101/2022.11.16.516735

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