Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Standardization of Data Analysis for RT-QuIC-based Detection of Chronic Wasting Disease

View ORCID ProfileGage R. Rowden, View ORCID ProfileCatalina Picasso-Risso, View ORCID ProfileManci Li, View ORCID ProfileMarc D. Schwabenlander, View ORCID ProfileTiffany Wolf, View ORCID ProfilePeter Larsen
doi: https://doi.org/10.1101/2022.11.17.516950
Gage R. Rowden
1Department of Veterinary and Biomedical Sciences, University of Minnesota, St. Paul, MN 55108, USA
2Minnesota Center for Prion Research and Outreach, University of Minnesota, St. Paul, MN 55108, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Gage R. Rowden
  • For correspondence: rowde002@umn.edu
Catalina Picasso-Risso
2Minnesota Center for Prion Research and Outreach, University of Minnesota, St. Paul, MN 55108, USA
3Department of Veterinary Population Medicine, University of Minnesota, St. Paul, MN 55108, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Catalina Picasso-Risso
Manci Li
1Department of Veterinary and Biomedical Sciences, University of Minnesota, St. Paul, MN 55108, USA
2Minnesota Center for Prion Research and Outreach, University of Minnesota, St. Paul, MN 55108, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Manci Li
Marc D. Schwabenlander
1Department of Veterinary and Biomedical Sciences, University of Minnesota, St. Paul, MN 55108, USA
2Minnesota Center for Prion Research and Outreach, University of Minnesota, St. Paul, MN 55108, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Marc D. Schwabenlander
Tiffany Wolf
2Minnesota Center for Prion Research and Outreach, University of Minnesota, St. Paul, MN 55108, USA
3Department of Veterinary Population Medicine, University of Minnesota, St. Paul, MN 55108, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Tiffany Wolf
Peter Larsen
1Department of Veterinary and Biomedical Sciences, University of Minnesota, St. Paul, MN 55108, USA
2Minnesota Center for Prion Research and Outreach, University of Minnesota, St. Paul, MN 55108, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Peter Larsen
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Preview PDF
Loading

Abstract

Chronic wasting disease (CWD) is a disease affecting cervids and is caused by prions accumulating as pathogenic fibrils in lymphoid tissue and the central nervous system. Approaches for detecting CWD prions historically relied on antibody-based assays. However, recent advancements in protein amplification technology provided the foundation for a new class of CWD diagnostic tools. In particular, real-time quaking-induced conversion (RT-QuIC) has rapidly become a feasible option for CWD diagnosis. Despite its increased usage for CWD-focused research, there lacks consensus regarding the interpretation of RT-QuIC data for diagnostic purposes. It is imperative then to identify a standardized and replicable method for determining CWD status from RT-QuIC data. Here, we assessed variables that could impact RT-QuIC results and explored the use of maxpoint ratios (maximumRFU/backgroundRFU) to improve the consistency of RT-QuIC analysis. We examined a variety of statistical analyses to retrospectively analyze CWD status based on RT-QuIC and ELISA results from 668 white-tailed deer lymph nodes. Our results revealed an MPR threshold of 2.0 for determining the rate of amyloid formation, and MPR analysis showed excellent agreement with independent ELISA results. These findings suggest that the use of MPR is a statistically viable option for normalizing between RT-QuIC experiments and defining CWD status.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵† Co-senior authors

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Back to top
PreviousNext
Posted November 17, 2022.
Download PDF

Supplementary Material

Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Standardization of Data Analysis for RT-QuIC-based Detection of Chronic Wasting Disease
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Standardization of Data Analysis for RT-QuIC-based Detection of Chronic Wasting Disease
Gage R. Rowden, Catalina Picasso-Risso, Manci Li, Marc D. Schwabenlander, Tiffany Wolf, Peter Larsen
bioRxiv 2022.11.17.516950; doi: https://doi.org/10.1101/2022.11.17.516950
Reddit logo Twitter logo Facebook logo LinkedIn logo Mendeley logo
Citation Tools
Standardization of Data Analysis for RT-QuIC-based Detection of Chronic Wasting Disease
Gage R. Rowden, Catalina Picasso-Risso, Manci Li, Marc D. Schwabenlander, Tiffany Wolf, Peter Larsen
bioRxiv 2022.11.17.516950; doi: https://doi.org/10.1101/2022.11.17.516950

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Molecular Biology
Subject Areas
All Articles
  • Animal Behavior and Cognition (4237)
  • Biochemistry (9147)
  • Bioengineering (6786)
  • Bioinformatics (24025)
  • Biophysics (12137)
  • Cancer Biology (9545)
  • Cell Biology (13795)
  • Clinical Trials (138)
  • Developmental Biology (7642)
  • Ecology (11716)
  • Epidemiology (2066)
  • Evolutionary Biology (15518)
  • Genetics (10650)
  • Genomics (14332)
  • Immunology (9493)
  • Microbiology (22858)
  • Molecular Biology (9103)
  • Neuroscience (49032)
  • Paleontology (355)
  • Pathology (1484)
  • Pharmacology and Toxicology (2572)
  • Physiology (3849)
  • Plant Biology (8338)
  • Scientific Communication and Education (1472)
  • Synthetic Biology (2296)
  • Systems Biology (6196)
  • Zoology (1302)