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Comparative Study of High-resolution LysB29(Nε-myristoyl) des(B30) Insulin Structures Display Novel Dynamic Causal Interrelations in Monomeric-Dimeric Motions

View ORCID ProfileEsra Ayan, View ORCID ProfileEbru Destan, Abdullah Kepceoğlu, View ORCID ProfileHalilibrahim Ciftci, Ahmet Katı, View ORCID ProfileHasan DeMirci
doi: https://doi.org/10.1101/2022.11.19.517203
Esra Ayan
1Department of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye
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Ebru Destan
1Department of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye
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Abdullah Kepceoğlu
1Department of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye
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Halilibrahim Ciftci
1Department of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye
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Ahmet Katı
2Department of Basic Medical Sciences, Division of Medical Biology, Faculty of Medicine, University of Health Sciences Türkiye, Istanbul, Türkiye
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Hasan DeMirci
1Department of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye
3Koç University Isbank Center for Infectious Diseases (KUISCID), Koç University, Istanbul, Türkiye
4Stanford PULSE Institute, SLAC National Laboratory, Menlo Park, CA, USA
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  • For correspondence: hdemirci@ku.edu.tr hdemirci@stanford.edu
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Abstract

The treatment of insulin-dependent diabetes mellitus is characterized by artificial supplementation of pancreatic β-cell ability to regulate sugar levels in the blood. Even though various insulin analogs are crucial for reasonable glycemic control, understanding the dynamic mechanism of the insulin analogs may help to improve the best-protracted insulin analog to assist people with Type 1 Diabetes (T1D) to live comfortably while maintaining tight glycemic control. Here we present the high-resolution crystal structure of NN304, known as insulin detemir, to 1.7 A resolution at cryogenic temperature. We computationally further investigated our crystal structure’s monomeric-dimeric conformation and dynamic profile by comparing it with a previously available detemir structure (PDB ID: 1XDA). Our structure (PDB ID: 8HGZ) obtained at elevated pH provides a distinct alternative dimeric conformation compared to the previous structure, suggesting it might induce an intermediate state in the dissociation pathway of the insulin detemir’s hexamer:dihexamer equilibrium. Combined with orientational cross-correlation analysis by Gaussian Network Model (GNM), this alternate oligomeric conformation offers the distinct cooperative motions of a protracted insulin analog that has not been previously observed.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted November 20, 2022.
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Comparative Study of High-resolution LysB29(Nε-myristoyl) des(B30) Insulin Structures Display Novel Dynamic Causal Interrelations in Monomeric-Dimeric Motions
Esra Ayan, Ebru Destan, Abdullah Kepceoğlu, Halilibrahim Ciftci, Ahmet Katı, Hasan DeMirci
bioRxiv 2022.11.19.517203; doi: https://doi.org/10.1101/2022.11.19.517203
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Comparative Study of High-resolution LysB29(Nε-myristoyl) des(B30) Insulin Structures Display Novel Dynamic Causal Interrelations in Monomeric-Dimeric Motions
Esra Ayan, Ebru Destan, Abdullah Kepceoğlu, Halilibrahim Ciftci, Ahmet Katı, Hasan DeMirci
bioRxiv 2022.11.19.517203; doi: https://doi.org/10.1101/2022.11.19.517203

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