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scCDC: a computational method for gene-specific contamination detection and correction in single-cell and single-nucleus RNA-seq data
Weijian Wang, Yihui Cen, Zezhen Lu, Yueqing Xu, Tianyi Sun, Ying Xiao, Wanlu Liu, View ORCID ProfileJingyi Jessica Li, View ORCID ProfileChaochen Wang
doi: https://doi.org/10.1101/2022.11.24.517598
Weijian Wang
1ZJU-UoE Institute, Zhejiang University School of Medicine, International Campus, Zhejiang University, Haining, 314400, Zhejiang, China
Yihui Cen
1ZJU-UoE Institute, Zhejiang University School of Medicine, International Campus, Zhejiang University, Haining, 314400, Zhejiang, China
Zezhen Lu
1ZJU-UoE Institute, Zhejiang University School of Medicine, International Campus, Zhejiang University, Haining, 314400, Zhejiang, China
Yueqing Xu
1ZJU-UoE Institute, Zhejiang University School of Medicine, International Campus, Zhejiang University, Haining, 314400, Zhejiang, China
Tianyi Sun
3Department of Statistics, University of California, Los Angeles, CA, 90095, USA
Ying Xiao
2Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, 310020, Zhejiang, China
Wanlu Liu
1ZJU-UoE Institute, Zhejiang University School of Medicine, International Campus, Zhejiang University, Haining, 314400, Zhejiang, China
Jingyi Jessica Li
3Department of Statistics, University of California, Los Angeles, CA, 90095, USA
Chaochen Wang
1ZJU-UoE Institute, Zhejiang University School of Medicine, International Campus, Zhejiang University, Haining, 314400, Zhejiang, China
4Department of Breast Surgery, The Second Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou, 310020, Zhejiang, China
5Biomedical and Health Translational Research Centre, Zhejiang University, 314400, Zhejiang, China
Posted November 25, 2022.
scCDC: a computational method for gene-specific contamination detection and correction in single-cell and single-nucleus RNA-seq data
Weijian Wang, Yihui Cen, Zezhen Lu, Yueqing Xu, Tianyi Sun, Ying Xiao, Wanlu Liu, Jingyi Jessica Li, Chaochen Wang
bioRxiv 2022.11.24.517598; doi: https://doi.org/10.1101/2022.11.24.517598
scCDC: a computational method for gene-specific contamination detection and correction in single-cell and single-nucleus RNA-seq data
Weijian Wang, Yihui Cen, Zezhen Lu, Yueqing Xu, Tianyi Sun, Ying Xiao, Wanlu Liu, Jingyi Jessica Li, Chaochen Wang
bioRxiv 2022.11.24.517598; doi: https://doi.org/10.1101/2022.11.24.517598
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