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METTL17 is an Fe-S cluster checkpoint for mitochondrial translation

Tslil Ast, Yuzuru Itoh, Shayan Sadre, Jason G. McCoy, Gil Namkoong, Ivan Chicherin, Pallavi R. Joshi, Piotr Kamenski, Daniel L. M. Suess, Alexey Amunts, Vamsi K. Mootha
doi: https://doi.org/10.1101/2022.11.24.517765
Tslil Ast
1Broad Institute, Cambridge, MA 02142, USA
2Howard Hughes Medical Institute, Howard Hughes Medical Institute, Massachusetts General Hospital, Boston, MA, 02114, USA
3Department of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114, USA
4Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA
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Yuzuru Itoh
5Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Solna, Sweden
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Shayan Sadre
1Broad Institute, Cambridge, MA 02142, USA
2Howard Hughes Medical Institute, Howard Hughes Medical Institute, Massachusetts General Hospital, Boston, MA, 02114, USA
3Department of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114, USA
4Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA
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Jason G. McCoy
1Broad Institute, Cambridge, MA 02142, USA
2Howard Hughes Medical Institute, Howard Hughes Medical Institute, Massachusetts General Hospital, Boston, MA, 02114, USA
3Department of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114, USA
4Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA
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Gil Namkoong
6Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
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Ivan Chicherin
7Department of Biology, M.V.Lomonosov Moscow State University, Moscow, 119234, Russia
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Pallavi R. Joshi
1Broad Institute, Cambridge, MA 02142, USA
2Howard Hughes Medical Institute, Howard Hughes Medical Institute, Massachusetts General Hospital, Boston, MA, 02114, USA
3Department of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114, USA
4Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA
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Piotr Kamenski
7Department of Biology, M.V.Lomonosov Moscow State University, Moscow, 119234, Russia
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Daniel L. M. Suess
6Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
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Alexey Amunts
5Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Solna, Sweden
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Vamsi K. Mootha
1Broad Institute, Cambridge, MA 02142, USA
2Howard Hughes Medical Institute, Howard Hughes Medical Institute, Massachusetts General Hospital, Boston, MA, 02114, USA
3Department of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114, USA
4Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA
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  • For correspondence: vamsi_mootha@hms.harvard.edu
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Abstract

Friedreich’s ataxia (FA) is the most common monogenic mitochondrial disease. FA is caused by a depletion of the mitochondrial protein frataxin (FXN), an iron-sulfur (Fe-S) cluster biogenesis factor. To better understand the cellular consequences of FA, we performed quantitative proteome profiling of human cells depleted for FXN. Nearly every known Fe-S cluster-containing protein was depleted in the absence of FXN, indicating that as a rule, cluster binding confers stability to Fe-S proteins. Proteomic and genetic interaction mapping identified impaired mitochondrial translation downstream of FXN loss, and specifically highlighted the methyltransferase-like protein METTL17 as a candidate effector. Using comparative sequence analysis, mutagenesis, biochemistry and cryogenic electron microscopy we show that METTL17 binds to the mitoribosomal small subunit during late assembly and harbors a previously unrecognized [Fe4S4]2+ cluster required for its stability on the mitoribosome. Notably, METTL17 overexpression rescued the mitochondrial translation and bioenergetic defects, but not the cellular growth, of FXN null cells. Our data suggest that METTL17 serves as an Fe-S cluster checkpoint: promoting the translation and assembly of Fe-S cluster rich OXPHOS proteins only when Fe-S cluster levels are replete.

Competing Interest Statement

VKM is on the scientific advisory boards of Janssen Pharmaceuticals and 5AM Ventures. TA and VKM are listed as inventors on a patent application filed by The Broad Institute on the use of METTL17 as a therapy.

Footnotes

  • Lead contact: Vamsi K. Mootha, MGH Department of Molecular Biology, 185 Cambridge Street 6th Floor Boston, MA 02114 vamsi{at}hms.harvard.edu

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted November 24, 2022.
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METTL17 is an Fe-S cluster checkpoint for mitochondrial translation
Tslil Ast, Yuzuru Itoh, Shayan Sadre, Jason G. McCoy, Gil Namkoong, Ivan Chicherin, Pallavi R. Joshi, Piotr Kamenski, Daniel L. M. Suess, Alexey Amunts, Vamsi K. Mootha
bioRxiv 2022.11.24.517765; doi: https://doi.org/10.1101/2022.11.24.517765
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METTL17 is an Fe-S cluster checkpoint for mitochondrial translation
Tslil Ast, Yuzuru Itoh, Shayan Sadre, Jason G. McCoy, Gil Namkoong, Ivan Chicherin, Pallavi R. Joshi, Piotr Kamenski, Daniel L. M. Suess, Alexey Amunts, Vamsi K. Mootha
bioRxiv 2022.11.24.517765; doi: https://doi.org/10.1101/2022.11.24.517765

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