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Multiplexed selectivity screening of anti-GPCR antibodies

View ORCID ProfileLeo Dahl, View ORCID ProfileIlana B. Kotliar, View ORCID ProfileAnnika Bendes, View ORCID ProfileTea Dodig-Crnković, View ORCID ProfileSamuel Fromm, View ORCID ProfileArne Elofsson, View ORCID ProfileMathias Uhlén, View ORCID ProfileThomas P. Sakmar, View ORCID ProfileJochen M. Schwenk
doi: https://doi.org/10.1101/2022.11.24.517810
Leo Dahl
1Science for Life Laboratory, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, 171 65 Solna, Sweden
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Ilana B. Kotliar
2Laboratory of Chemical Biology and Signal Transduction, The Rockefeller University, 1230 York Ave., New York, NY 10065, USA
3Tri-Institutional PhD Program in Chemical Biology, New York, NY 10065, USA
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Annika Bendes
1Science for Life Laboratory, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, 171 65 Solna, Sweden
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Tea Dodig-Crnković
1Science for Life Laboratory, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, 171 65 Solna, Sweden
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Samuel Fromm
4Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, 171 65 Solna, Sweden
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Arne Elofsson
4Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, 171 65 Solna, Sweden
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Mathias Uhlén
1Science for Life Laboratory, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, 171 65 Solna, Sweden
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Thomas P. Sakmar
2Laboratory of Chemical Biology and Signal Transduction, The Rockefeller University, 1230 York Ave., New York, NY 10065, USA
5Department of Neurobiology, Care Sciences and Society, Section for Neurogeriatrics, Karolinska Institutet, 171 64 Solna, Sweden
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  • For correspondence: sakmar@rockefeller.edu Jochen.schwenk@scilifelab.se
Jochen M. Schwenk
1Science for Life Laboratory, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, 171 65 Solna, Sweden
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  • For correspondence: sakmar@rockefeller.edu Jochen.schwenk@scilifelab.se
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ABSTRACT

G protein-coupled receptors (GPCRs) control critical cellular signaling pathways. Therapeutic agents, such as antibodies (Abs), are being developed to modulate GPCR signaling pathways. However, validating the selectivity of anti-GPCR Abs is challenging due to sequence similarities of individual receptors within GPCR subfamilies. To address this, we developed a multiplexed immunoassay to test >400 anti-GPCR Abs from the Human Protein Atlas targeting a customized library of 215 expressed and solubilized GPCRs representing all GPCR subfamilies. We found that ~61% of Abs were selective for their intended target, ~11% to bind off-target, and ~28% not to bind any GPCR. Antigens of on-target Abs were, on average, significantly longer, more disordered, and less likely to be buried in the interior of the GPCR protein than the other Abs. These results provide important insights into the immunogenicity of GPCR epitopes and form a basis for the design of therapeutic Abs and the detection of pathological auto-antibodies.

TEASER A multiplexed library-to-library selectivity analysis of 400 anti-GPCR antibodies within subfamilies of 200 solubilized receptors.

Competing Interest Statement

M.U. is a cofounder of Atlas Antibodies AB, the commercial distributor of some of the Abs used in this study. J.M.S. acknowledges a relationship with Atlas Antibodies AB. J.M.S. has, unrelated to this study, conducted contract research with Luminex Corp. and received speaker fees from Roche Diagnostics. The other authors declare that they have no competing interests. All other authors declare they have no competing interests.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted November 24, 2022.
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Multiplexed selectivity screening of anti-GPCR antibodies
Leo Dahl, Ilana B. Kotliar, Annika Bendes, Tea Dodig-Crnković, Samuel Fromm, Arne Elofsson, Mathias Uhlén, Thomas P. Sakmar, Jochen M. Schwenk
bioRxiv 2022.11.24.517810; doi: https://doi.org/10.1101/2022.11.24.517810
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Multiplexed selectivity screening of anti-GPCR antibodies
Leo Dahl, Ilana B. Kotliar, Annika Bendes, Tea Dodig-Crnković, Samuel Fromm, Arne Elofsson, Mathias Uhlén, Thomas P. Sakmar, Jochen M. Schwenk
bioRxiv 2022.11.24.517810; doi: https://doi.org/10.1101/2022.11.24.517810

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