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Genomics of Preaxostyla Flagellates Illuminates Evolutionary Transitions and the Path Towards Mitochondrial Loss

View ORCID ProfileLukáš V. F. Novák, View ORCID ProfileSebastian C. Treitli, View ORCID ProfileJan Pyrih, View ORCID ProfilePaweł Hałakuc, View ORCID ProfileShweta V. Pipaliya, View ORCID ProfileVojtěch Vacek, View ORCID ProfileOndřej Brzoň, View ORCID ProfilePetr Soukal, View ORCID ProfileLaura Eme, View ORCID ProfileJoel B. Dacks, View ORCID ProfileAnna Karnkowska, View ORCID ProfileMarek Eliáš, View ORCID ProfileVladimír Hampl
doi: https://doi.org/10.1101/2022.11.24.517819
Lukáš V. F. Novák
1Charles University, Faculty of Science, Department of Parasitology, BIOCEV, Vestec, Czech Republic.
2Ecology, Systematics, and Evolution Unit, Université Paris-Saclay, CNRS, Orsay, France
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Sebastian C. Treitli
1Charles University, Faculty of Science, Department of Parasitology, BIOCEV, Vestec, Czech Republic.
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Jan Pyrih
1Charles University, Faculty of Science, Department of Parasitology, BIOCEV, Vestec, Czech Republic.
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Paweł Hałakuc
3Institute of Evolutionary Biology, Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Poland.
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Shweta V. Pipaliya
4Division of Infectious Diseases, Department of Medicine, University of Alberta, Edmonton, Canada
5School of Life Sciences, Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland
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Vojtěch Vacek
1Charles University, Faculty of Science, Department of Parasitology, BIOCEV, Vestec, Czech Republic.
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Ondřej Brzoň
1Charles University, Faculty of Science, Department of Parasitology, BIOCEV, Vestec, Czech Republic.
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Petr Soukal
1Charles University, Faculty of Science, Department of Parasitology, BIOCEV, Vestec, Czech Republic.
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Laura Eme
2Ecology, Systematics, and Evolution Unit, Université Paris-Saclay, CNRS, Orsay, France
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Joel B. Dacks
4Division of Infectious Diseases, Department of Medicine, University of Alberta, Edmonton, Canada
6Institute of Parasitology, Biology Centre, Czech Academy of Sciences, České Budějovice, Czechia.
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Anna Karnkowska
3Institute of Evolutionary Biology, Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Poland.
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Marek Eliáš
7University of Ostrava, Faculty of Science, Department of Biology and Ecology, Ostrava, Czech Republic.
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Vladimír Hampl
1Charles University, Faculty of Science, Department of Parasitology, BIOCEV, Vestec, Czech Republic.
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  • For correspondence: vladimir.hampl@natur.cuni.cz
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ABSTRACT

Until recently, mitochondria were considered essential organelles impossible to truly lose in a lineage. This view changed in 2016, with the report that the oxymonad Monocercomonoides exilis, was the first known eukaryote without any mitochondrion. Questions remain, however, about whether this extends to the entire lineage and how this transition took place. Oxymonadida are a group of gut endobionts of insects, reptiles, and mammals. They are housed in the Preaxostyla (Metamonada), a protistan group that also contains free-living flagellates of genera Trimastix and Paratrimastix. These latter two taxa harbor conspicuous mitochondrion-related organelles (MROs), while no mitochondria were reported for any oxymonad. Here we report genomic data sets of two Preaxostyla representatives, the free-living Paratrimastix pyriformis and the oxymonad Blattamonas nauphoetae. We note that P. pyriformis possesses a set of unique or ancestral features among metamonads or eukaryotes, e.g., p-cresol synthesis, UFMylation system, NAD+ synthesis, selenium volatilization, or mercury methylation, demonstrating the biochemical versatility of this protist lineage. We performed thorough comparisons among all available genomic and transcriptomic data of Preaxostyla to corroborate both the absence of MRO in Oxymonadida and the nature of MROs present in other Preaxostyla and to decipher the evolutionary transition towards amitochondriality and endobiosis. Our results provide insights into the metabolic and endomembrane evolution, but most strikingly the data confirm the complete loss of mitochondria and every protein that has ever participated in the mitochondrion function for all three oxymonad species (M. exilis, B. nauphoetae, and Streblomastix strix) extending the amitochondriate status to the whole Oxymonadida.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.
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Posted November 24, 2022.
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Genomics of Preaxostyla Flagellates Illuminates Evolutionary Transitions and the Path Towards Mitochondrial Loss
Lukáš V. F. Novák, Sebastian C. Treitli, Jan Pyrih, Paweł Hałakuc, Shweta V. Pipaliya, Vojtěch Vacek, Ondřej Brzoň, Petr Soukal, Laura Eme, Joel B. Dacks, Anna Karnkowska, Marek Eliáš, Vladimír Hampl
bioRxiv 2022.11.24.517819; doi: https://doi.org/10.1101/2022.11.24.517819
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Genomics of Preaxostyla Flagellates Illuminates Evolutionary Transitions and the Path Towards Mitochondrial Loss
Lukáš V. F. Novák, Sebastian C. Treitli, Jan Pyrih, Paweł Hałakuc, Shweta V. Pipaliya, Vojtěch Vacek, Ondřej Brzoň, Petr Soukal, Laura Eme, Joel B. Dacks, Anna Karnkowska, Marek Eliáš, Vladimír Hampl
bioRxiv 2022.11.24.517819; doi: https://doi.org/10.1101/2022.11.24.517819

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