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Synthetic in vivo compartmentalisation improves metabolic flux and modulates the product profile of promiscuous enzymes

View ORCID ProfileLi Chen Cheah, Lian Liu, Manuel R. Plan, View ORCID ProfileBingyin Peng, View ORCID ProfileZeyu Lu, View ORCID ProfileGerhard Schenk, View ORCID ProfileClaudia E. Vickers, View ORCID ProfileFrank Sainsbury
doi: https://doi.org/10.1101/2022.11.24.517869
Li Chen Cheah
1Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, St Lucia, QLD 4072, Australia
2CSIRO Future Science Platform in Synthetic Biology, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Dutton Park, QLD 4102, Australia
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Lian Liu
3Metabolomics Australia (Queensland Node), The University of Queensland, QLD 4072, Australia
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Manuel R. Plan
3Metabolomics Australia (Queensland Node), The University of Queensland, QLD 4072, Australia
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Bingyin Peng
1Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, St Lucia, QLD 4072, Australia
2CSIRO Future Science Platform in Synthetic Biology, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Dutton Park, QLD 4102, Australia
4ARC Centre of Excellence in Synthetic Biology, Queensland University of Technology, Brisbane, QLD 4000, Australia
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Zeyu Lu
1Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, St Lucia, QLD 4072, Australia
4ARC Centre of Excellence in Synthetic Biology, Queensland University of Technology, Brisbane, QLD 4000, Australia
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Gerhard Schenk
1Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, St Lucia, QLD 4072, Australia
5School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD 4072, Australia
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Claudia E. Vickers
1Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, St Lucia, QLD 4072, Australia
2CSIRO Future Science Platform in Synthetic Biology, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Dutton Park, QLD 4102, Australia
4ARC Centre of Excellence in Synthetic Biology, Queensland University of Technology, Brisbane, QLD 4000, Australia
6Centre for Cell Factories and Biopolymers, Griffith Institute for Drug Discovery, Griffith University, Nathan, QLD 4111, Australia
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  • For correspondence: f.sainsbury@griffith.edu.au claudia.vickers@qut.edu.au
Frank Sainsbury
1Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, St Lucia, QLD 4072, Australia
2CSIRO Future Science Platform in Synthetic Biology, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Dutton Park, QLD 4102, Australia
6Centre for Cell Factories and Biopolymers, Griffith Institute for Drug Discovery, Griffith University, Nathan, QLD 4111, Australia
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  • For correspondence: f.sainsbury@griffith.edu.au claudia.vickers@qut.edu.au
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ABSTRACT

Enzyme spatial organisation and compartmentalisation are naturally evolved mechanisms for facilitating multi-step biocatalysis. We explored the synthetic in vivo co-encapsulation of two different cargo proteins in yeast using a self-assembling virus-like particle. Co-encapsulation was verified using single particle techniques for both end-to-end fusion of the cargo proteins with the encapsulation anchor at one end, and coexpression of each cargo protein with their individual anchors. The co-encapsulation of a bifunctional geranyl diphosphate/farnesyl diphosphate synthase and a bifunctional linalool/nerolidol synthase delivered nerolidol titres up to 30 times that of an unorganised ‘free’ enzyme control, a remarkable improvement from a single engineering step. Interestingly, striking differences in the ratio of products (linalool and nerolidol) were observed with each spatial organisation approach. This work presents the largest reported titre fold increases from in vivo enzyme compartmentalisation and suggests that enzyme spatial organisation could be used to modulate the product profile of promiscuous enzymes.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted November 25, 2022.
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Synthetic in vivo compartmentalisation improves metabolic flux and modulates the product profile of promiscuous enzymes
Li Chen Cheah, Lian Liu, Manuel R. Plan, Bingyin Peng, Zeyu Lu, Gerhard Schenk, Claudia E. Vickers, Frank Sainsbury
bioRxiv 2022.11.24.517869; doi: https://doi.org/10.1101/2022.11.24.517869
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Synthetic in vivo compartmentalisation improves metabolic flux and modulates the product profile of promiscuous enzymes
Li Chen Cheah, Lian Liu, Manuel R. Plan, Bingyin Peng, Zeyu Lu, Gerhard Schenk, Claudia E. Vickers, Frank Sainsbury
bioRxiv 2022.11.24.517869; doi: https://doi.org/10.1101/2022.11.24.517869

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