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Identifying transcriptomic downstream targets of genes commonly mutated in Hereditary Hemorrhagic Telangiectasia

View ORCID ProfileMd Khadem Ali, Yu Liu, Katharina Schimmel, Nicholas H. Juul, Courtney A. Stockman, Joseph C. Wu, Edda F. Spiekerkoetter
doi: https://doi.org/10.1101/2022.11.25.517570
Md Khadem Ali
1Department of Medicine, Division of Pulmonary, Allergy and Critical Care Medicine, Stanford University, Stanford, CA, USA
2Vera Moulton Wall Center for Pulmonary Vascular Disease, Stanford University, Stanford, CA, USA
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  • ORCID record for Md Khadem Ali
Yu Liu
3Stanford Cardiovascular Institute, Stanford University School of Medicine, Stanford, CA, USA
4Division of Cardiovascular Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA
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Katharina Schimmel
1Department of Medicine, Division of Pulmonary, Allergy and Critical Care Medicine, Stanford University, Stanford, CA, USA
2Vera Moulton Wall Center for Pulmonary Vascular Disease, Stanford University, Stanford, CA, USA
3Stanford Cardiovascular Institute, Stanford University School of Medicine, Stanford, CA, USA
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Nicholas H. Juul
5Institute for Stem Cell Biology and Regenerative Medicine, Division of Pulmonary Allergy and Critical Care Medicine
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Courtney A. Stockman
5Institute for Stem Cell Biology and Regenerative Medicine, Division of Pulmonary Allergy and Critical Care Medicine
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Joseph C. Wu
3Stanford Cardiovascular Institute, Stanford University School of Medicine, Stanford, CA, USA
4Division of Cardiovascular Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA
6Molecular Imaging Program at Stanford, Department of Radiology, Stanford University School of Medicine, Stanford, CA, USA
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Edda F. Spiekerkoetter
1Department of Medicine, Division of Pulmonary, Allergy and Critical Care Medicine, Stanford University, Stanford, CA, USA
2Vera Moulton Wall Center for Pulmonary Vascular Disease, Stanford University, Stanford, CA, USA
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  • For correspondence: eddas@stanford.edu
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Abstract

Hereditary Hemorrhagic Telangiectasia (HHT) is an autosomal dominant disease that causes arteriovenous vascular malformations (AVMs) in different organs, including the lung. Three genes, ENG (endoglin), ACVRL1 (ALK1) and SMAD4, all members of the TGF-β/BMPR2 signaling pathway, are responsible for over 85% of all HHT cases. However, how these loss-of-function gene mutations lead to AVMs formation and what common downstream signaling they target is unknown. Here, using a combination of siRNA-mediated gene silencing, whole transcriptomic RNA sequencing, bioinformatic analysis, transcriptomic-based drug discovery, endothelial cells functional assays and VEGF signaling analysis, and ex vivo precision cut lung slice (PCLS) cultures approach, we uncovered common downstream transcriptomic gene signatures of HHT-casing genes and identified promising drug for HHT. We found the commonly used BMPR2-signaling downstream target ID1 is not a common downstream target of all the three HHT genes knockdown in human pulmonary microvascular endothelial cells (PMVECs). We identified novel common downstream targets of all the three HHT-causing genes that were enriched for HHT-related biological process and signaling pathways. Among those downstream genes, LYVE1, GPNMB, and MC5R were strong downstream targets that could serve as a better common downstream target than ID1. Furthermore, using the common downstream upregulated genes (HHT disease signature) following HHT gene knockdown, we identified a small molecule drug, Brivanib, that reversed the HHT disease signature, and inhibited VEGF-induced ERK1/2 phosphorylation, proliferation, and angiogenesis in PMVECs and inhibited some of the upregulated HHT disease genes in PCLS. Our findings suggest that Brivanib could be an emerging new drug for HHT.

Competing Interest Statement

The authors declare no competing or financial interests. A patent application for the use of Brivanib in HHT is currently filed by Stanford University.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted November 26, 2022.
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Identifying transcriptomic downstream targets of genes commonly mutated in Hereditary Hemorrhagic Telangiectasia
Md Khadem Ali, Yu Liu, Katharina Schimmel, Nicholas H. Juul, Courtney A. Stockman, Joseph C. Wu, Edda F. Spiekerkoetter
bioRxiv 2022.11.25.517570; doi: https://doi.org/10.1101/2022.11.25.517570
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Identifying transcriptomic downstream targets of genes commonly mutated in Hereditary Hemorrhagic Telangiectasia
Md Khadem Ali, Yu Liu, Katharina Schimmel, Nicholas H. Juul, Courtney A. Stockman, Joseph C. Wu, Edda F. Spiekerkoetter
bioRxiv 2022.11.25.517570; doi: https://doi.org/10.1101/2022.11.25.517570

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