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Spontaneous confinement of mRNA at RNP granule interfaces

Rebecca T. Perelman, Andreas Schmidt, Umar Khan, Nils G. Walter
doi: https://doi.org/10.1101/2022.11.28.518040
Rebecca T. Perelman
1Single Molecule Analysis Group, University of Michigan, Ann Arbor, MI 48109
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Andreas Schmidt
1Single Molecule Analysis Group, University of Michigan, Ann Arbor, MI 48109
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Umar Khan
2Center for Advanced Biomedical Imaging and Photonics, Beth Israel Deaconess Medical Center, Harvard University, Boston, MA 02115
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Nils G. Walter
1Single Molecule Analysis Group, University of Michigan, Ann Arbor, MI 48109
3Center for RNA Biomedicine, Department of Chemistry, University of Michigan, Ann Arbor, MI 48109
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  • For correspondence: nwalter@umich.edu
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Abstract

Cellular membraneless organelles termed ribonucleoprotein (RNP) granules often are enriched in messenger RNA (mRNA) molecules relative to the surrounding cytoplasm. Yet, the spatial localization and diffusion of mRNAs in close proximity to phase separated RNP granules is not well understood. In this study, we performed single molecule fluorescence imaging experiments of mRNAs in live cells in the presence of two types of RNP granules, stress granules (SG) and processing bodies (PB), which are distinct in their molecular composition and function. We developed a new colocalization imaging algorithm that was employed to determine the accurate positions of individual mRNAs relative to the granule’s boundaries. We found that mRNA is often localized at granule boundaries, an observation consistent with recently published data1,2. We suggest that mRNA molecules become spontaneously confined at the RNP granule boundary similar to the adsorption of polymer molecules at liquid-liquid interfaces, which is observed in various technological and biological processes.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted November 28, 2022.
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Spontaneous confinement of mRNA at RNP granule interfaces
Rebecca T. Perelman, Andreas Schmidt, Umar Khan, Nils G. Walter
bioRxiv 2022.11.28.518040; doi: https://doi.org/10.1101/2022.11.28.518040
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Spontaneous confinement of mRNA at RNP granule interfaces
Rebecca T. Perelman, Andreas Schmidt, Umar Khan, Nils G. Walter
bioRxiv 2022.11.28.518040; doi: https://doi.org/10.1101/2022.11.28.518040

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