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A versatile method to archive and delipidate brain tissues for ensuing multiplexed immunolabeling and organ-level imaging

Ya-Hui Lin, Li-Wen Wang, Yen-Hui Chen, Yi-Chieh Chan, Shang-Hsiu Hu, Sheng-Yan Wu, Chi-Shiun Chiang, Guan-Jie Huang, Shang-Da Yang, Shi-Wei Chu, Kuo-Chuan Wang, Chin-Hsien Lin, Pei-Hsin Huang, Hwai-Jong Cheng, View ORCID ProfileBi-Chang Chen, View ORCID ProfileLi-An Chu
doi: https://doi.org/10.1101/2022.11.28.518189
Ya-Hui Lin
1Department of Biomedical Engineering and Environmental Sciences, National Tsing Hua University, Hsinchu, Taiwan
2Brain Research Center, National Tsing Hua University, Hsinchu, Taiwan
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Li-Wen Wang
1Department of Biomedical Engineering and Environmental Sciences, National Tsing Hua University, Hsinchu, Taiwan
2Brain Research Center, National Tsing Hua University, Hsinchu, Taiwan
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Yen-Hui Chen
3Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan
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Yi-Chieh Chan
1Department of Biomedical Engineering and Environmental Sciences, National Tsing Hua University, Hsinchu, Taiwan
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Shang-Hsiu Hu
1Department of Biomedical Engineering and Environmental Sciences, National Tsing Hua University, Hsinchu, Taiwan
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Sheng-Yan Wu
1Department of Biomedical Engineering and Environmental Sciences, National Tsing Hua University, Hsinchu, Taiwan
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Chi-Shiun Chiang
1Department of Biomedical Engineering and Environmental Sciences, National Tsing Hua University, Hsinchu, Taiwan
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Guan-Jie Huang
2Brain Research Center, National Tsing Hua University, Hsinchu, Taiwan
4Department of Physics, National Taiwan University, Taipei, Taiwan
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Shang-Da Yang
2Brain Research Center, National Tsing Hua University, Hsinchu, Taiwan
5Institute of Photonics Technologies, National Tsing Hua University
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Shi-Wei Chu
2Brain Research Center, National Tsing Hua University, Hsinchu, Taiwan
4Department of Physics, National Taiwan University, Taipei, Taiwan
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Kuo-Chuan Wang
6Department of Neurosurgery, National Taiwan University Hospital, College of Medicine, National Taiwan University, Taipei, Taiwan
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Chin-Hsien Lin
7Department of Neurology, National Taiwan University Hospital, College of Medicine, National Taiwan University, Taipei, Taiwan
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Pei-Hsin Huang
8Department of Pathology, National Taiwan University Hospital, Taipei, Taiwan
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Hwai-Jong Cheng
9Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan
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Bi-Chang Chen
10Research Center for Applied Sciences, Academia Sinica, Taipei, Taiwan
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  • ORCID record for Bi-Chang Chen
Li-An Chu
1Department of Biomedical Engineering and Environmental Sciences, National Tsing Hua University, Hsinchu, Taiwan
2Brain Research Center, National Tsing Hua University, Hsinchu, Taiwan
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  • ORCID record for Li-An Chu
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Abstract

Current tissue clearing and labeling approaches require freshly prepared samples to avoid problems related to over-fixation, such as loss of antigenicity or difficulty of tissue clearing. Thus, the predicament of specimens with long-term preservation limits the application of state-of-art technology to archived human brain tissues. Here, we present the development and validation of multiplex labeling of centimeter-sized archived tissue (MOCAT)—a formalin-fixed paraffin-embedding (FFPE)–based sample preservation and delipidation technique for centimeter-level tissue clearing and immunolabeling. We demonstrate that MOCAT sufficiently delipidates whole mouse brain and human brain blocks and is superior to 10% formalin for long-term antigenicity preservation; moreover, the spatial information of biomarkers offered by MOCAT-processed intact mouse brains is identical to that offered by freshly prepared SDS-delipidated intact mouse brains. MOCAT not only satisfies the need for long-term tissue storage before performing volumetric multiplex imaging for research purposes but also has the potential to be used in human clinical examination.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted December 02, 2022.
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A versatile method to archive and delipidate brain tissues for ensuing multiplexed immunolabeling and organ-level imaging
Ya-Hui Lin, Li-Wen Wang, Yen-Hui Chen, Yi-Chieh Chan, Shang-Hsiu Hu, Sheng-Yan Wu, Chi-Shiun Chiang, Guan-Jie Huang, Shang-Da Yang, Shi-Wei Chu, Kuo-Chuan Wang, Chin-Hsien Lin, Pei-Hsin Huang, Hwai-Jong Cheng, Bi-Chang Chen, Li-An Chu
bioRxiv 2022.11.28.518189; doi: https://doi.org/10.1101/2022.11.28.518189
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A versatile method to archive and delipidate brain tissues for ensuing multiplexed immunolabeling and organ-level imaging
Ya-Hui Lin, Li-Wen Wang, Yen-Hui Chen, Yi-Chieh Chan, Shang-Hsiu Hu, Sheng-Yan Wu, Chi-Shiun Chiang, Guan-Jie Huang, Shang-Da Yang, Shi-Wei Chu, Kuo-Chuan Wang, Chin-Hsien Lin, Pei-Hsin Huang, Hwai-Jong Cheng, Bi-Chang Chen, Li-An Chu
bioRxiv 2022.11.28.518189; doi: https://doi.org/10.1101/2022.11.28.518189

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