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Glucose modulates transcription factor dimerization to enable tissue differentiation

View ORCID ProfileVanessa Lopez-Pajares, Aparna Bhaduri, Yang Zhao, Gayatri Gowrishankar, Laura Donohue, Margaret G. Guo, Zurab Siprashvili, Weili Miao, Duy T. Nguyen, Albert M. Li, Ronald L. Shanderson, Robin M. Meyers, Angela Guerrero, Andrew L. Ji, Omar S. Garcia, Shiying Tao, Lindsey M. Meservey, Xue Yang, Sanjiv S. Gambhir, Jiangbin Ye, Paul A. Khavari
doi: https://doi.org/10.1101/2022.11.28.518222
Vanessa Lopez-Pajares
1Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA 94305
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  • ORCID record for Vanessa Lopez-Pajares
Aparna Bhaduri
1Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA 94305
2Program in Cancer Biology, Stanford University, Stanford, CA 94305
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Yang Zhao
1Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA 94305
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Gayatri Gowrishankar
3Departments of Bioengineering and Radiology, Stanford University, Stanford, CA 94305
4Molecular Imaging Program at Stanford, Stanford University, Stanford, CA 94305
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Laura Donohue
1Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA 94305
5Department of Genetics, Stanford University, Stanford, CA 94305
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Margaret G. Guo
1Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA 94305
6Program in Biomedical Informatics, Stanford University, Stanford, CA 94305
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Zurab Siprashvili
1Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA 94305
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Weili Miao
1Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA 94305
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Duy T. Nguyen
1Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA 94305
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Albert M. Li
8Department of Radiation Oncology, Stanford University, Stanford, CA 94305
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Ronald L. Shanderson
1Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA 94305
2Program in Cancer Biology, Stanford University, Stanford, CA 94305
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Robin M. Meyers
1Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA 94305
5Department of Genetics, Stanford University, Stanford, CA 94305
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Angela Guerrero
1Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA 94305
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Andrew L. Ji
1Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA 94305
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Omar S. Garcia
1Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA 94305
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Shiying Tao
1Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA 94305
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Lindsey M. Meservey
7Department of Biology, Stanford University, Stanford, CA 94305
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Xue Yang
2Program in Cancer Biology, Stanford University, Stanford, CA 94305
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Sanjiv S. Gambhir
3Departments of Bioengineering and Radiology, Stanford University, Stanford, CA 94305
4Molecular Imaging Program at Stanford, Stanford University, Stanford, CA 94305
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Jiangbin Ye
8Department of Radiation Oncology, Stanford University, Stanford, CA 94305
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Paul A. Khavari
1Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA 94305
2Program in Cancer Biology, Stanford University, Stanford, CA 94305
9Veterans Affairs Palo Alto Healthcare System, Palo Alto, CA 94304 USA
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  • For correspondence: khavari@stanford.edu
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Abstract

Glucose is a universal energy currency for living organisms, however, its non-energetic functions in processes such as differentiation are undefined. In epidermis, differentiating cells exhibit dynamic changes in gene expression1–4 driven by specific transcription factors (TFs)5–9. The interplay between such TFs and biomolecules that also change in this process is not understood. Metabolomic analyses revealed that increased intracellular glucose accompanies differentiation of epidermal keratinocytes. This elevation also occurred in differentiating cells from other tissues and was verified in epidermal tissue engineered with glucose sensors, which detected a glucose gradient that peaked in the outermost differentiated layers. Free glucose accumulation, unaccompanied by its increased metabolism, was essential for epidermal differentiation and required GLUT1, GLUT3, and SGLT1 transporters. Glucose affinity chromatography and azido-glucose click chemistry uncovered glucose binding to diverse regulatory proteins, including the IRF6 TF, whose epidermal knockout confirmed its requirement in glucose-dependent differentiation. Direct glucose binding enabled IRF6 dimerization, DNA binding, genomic localization, and induction of IRF6 target genes, including essential pro-differentiation TFs GRHL1, GRHL3, HOPX and PRDM1. The IRF6R84C mutant found in undifferentiated cancers was unable to bind glucose. These data identify a new role for glucose as a gradient morphogen that modulates protein multimerization in cellular differentiation.

Competing Interest Statement

The authors have declared no competing interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted November 28, 2022.
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Glucose modulates transcription factor dimerization to enable tissue differentiation
Vanessa Lopez-Pajares, Aparna Bhaduri, Yang Zhao, Gayatri Gowrishankar, Laura Donohue, Margaret G. Guo, Zurab Siprashvili, Weili Miao, Duy T. Nguyen, Albert M. Li, Ronald L. Shanderson, Robin M. Meyers, Angela Guerrero, Andrew L. Ji, Omar S. Garcia, Shiying Tao, Lindsey M. Meservey, Xue Yang, Sanjiv S. Gambhir, Jiangbin Ye, Paul A. Khavari
bioRxiv 2022.11.28.518222; doi: https://doi.org/10.1101/2022.11.28.518222
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Glucose modulates transcription factor dimerization to enable tissue differentiation
Vanessa Lopez-Pajares, Aparna Bhaduri, Yang Zhao, Gayatri Gowrishankar, Laura Donohue, Margaret G. Guo, Zurab Siprashvili, Weili Miao, Duy T. Nguyen, Albert M. Li, Ronald L. Shanderson, Robin M. Meyers, Angela Guerrero, Andrew L. Ji, Omar S. Garcia, Shiying Tao, Lindsey M. Meservey, Xue Yang, Sanjiv S. Gambhir, Jiangbin Ye, Paul A. Khavari
bioRxiv 2022.11.28.518222; doi: https://doi.org/10.1101/2022.11.28.518222

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