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Oxygen is a critical regulator of cellular metabolism and function in cell culture

View ORCID ProfileJoycelyn Tan, View ORCID ProfileSam Virtue, Dougall M. Norris, View ORCID ProfileOlivia J. Conway, Ming Yang, Christopher Gribben, Fatima Lugtu, View ORCID ProfileJames R. Krycer, Richard J. Mills, View ORCID ProfileIoannis Kamzolas, Conceição Pereira, Martin Dale, View ORCID ProfileAmber S. Shun-Shion, Harry J. M. Baird, James A. Horscroft, Alice P. Sowton, Marcella Ma, Stefania Carobbio, View ORCID ProfileEvangelia Petsalaki, Andrew J. Murray, View ORCID ProfileDavid C. Gershlick, James E. Hudson, View ORCID ProfileLudovic Vallier, Kelsey H. Fisher-Wellman, View ORCID ProfileChristian Frezza, Antonio Vidal-Puig, View ORCID ProfileDaniel J. Fazakerley
doi: https://doi.org/10.1101/2022.11.29.516437
Joycelyn Tan
1Metabolic Research Laboratories, Wellcome-Medical Research Council Institute of Metabolic Science, University of Cambridge, Cambridge CB2 0QQ, UK
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Sam Virtue
1Metabolic Research Laboratories, Wellcome-Medical Research Council Institute of Metabolic Science, University of Cambridge, Cambridge CB2 0QQ, UK
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  • For correspondence: djf72@medschl.cam.ac.uk ajv22@medschl.cam.ac.uk sv234@medschl.cam.ac.uk
Dougall M. Norris
1Metabolic Research Laboratories, Wellcome-Medical Research Council Institute of Metabolic Science, University of Cambridge, Cambridge CB2 0QQ, UK
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Olivia J. Conway
1Metabolic Research Laboratories, Wellcome-Medical Research Council Institute of Metabolic Science, University of Cambridge, Cambridge CB2 0QQ, UK
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Ming Yang
2MRC Cancer Unit, University of Cambridge, Cambridge Biomedical Campus, Cambridge CB2 0XZ, UK
3CECAD Research Center, Faculty of Medicine, University Hospital Cologne, Cologne 50931, Germany
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Christopher Gribben
4Wellcome-MRC Cambridge Stem Cell Institute, University of Cambridge, Cambridge CB2 0AW, UK
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Fatima Lugtu
4Wellcome-MRC Cambridge Stem Cell Institute, University of Cambridge, Cambridge CB2 0AW, UK
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James R. Krycer
5QIMR Berghofer Medical Research Institute, Brisbane, Queensland 4006, Australia
6Faculty of Health, School of Biomedical Sciences, Queensland University of Technology, Brisbane, Queensland 4000, Australia
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Richard J. Mills
5QIMR Berghofer Medical Research Institute, Brisbane, Queensland 4006, Australia
6Faculty of Health, School of Biomedical Sciences, Queensland University of Technology, Brisbane, Queensland 4000, Australia
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Ioannis Kamzolas
1Metabolic Research Laboratories, Wellcome-Medical Research Council Institute of Metabolic Science, University of Cambridge, Cambridge CB2 0QQ, UK
7European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton CB10 1SD, UK
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Conceição Pereira
8Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UK
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Martin Dale
1Metabolic Research Laboratories, Wellcome-Medical Research Council Institute of Metabolic Science, University of Cambridge, Cambridge CB2 0QQ, UK
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Amber S. Shun-Shion
1Metabolic Research Laboratories, Wellcome-Medical Research Council Institute of Metabolic Science, University of Cambridge, Cambridge CB2 0QQ, UK
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Harry J. M. Baird
1Metabolic Research Laboratories, Wellcome-Medical Research Council Institute of Metabolic Science, University of Cambridge, Cambridge CB2 0QQ, UK
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James A. Horscroft
9Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge CB2 3EL, UK
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Alice P. Sowton
9Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge CB2 3EL, UK
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Marcella Ma
1Metabolic Research Laboratories, Wellcome-Medical Research Council Institute of Metabolic Science, University of Cambridge, Cambridge CB2 0QQ, UK
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Stefania Carobbio
1Metabolic Research Laboratories, Wellcome-Medical Research Council Institute of Metabolic Science, University of Cambridge, Cambridge CB2 0QQ, UK
10Centro de Investigacion Principe Felipe, Valencia 46012, Spain
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Evangelia Petsalaki
7European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton CB10 1SD, UK
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Andrew J. Murray
9Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge CB2 3EL, UK
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David C. Gershlick
8Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UK
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James E. Hudson
5QIMR Berghofer Medical Research Institute, Brisbane, Queensland 4006, Australia
6Faculty of Health, School of Biomedical Sciences, Queensland University of Technology, Brisbane, Queensland 4000, Australia
11Faculty of Medicine, School of Biomedical Sciences, The University of Queensland, Brisbane, Queensland 4072, Australia
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Ludovic Vallier
4Wellcome-MRC Cambridge Stem Cell Institute, University of Cambridge, Cambridge CB2 0AW, UK
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Kelsey H. Fisher-Wellman
12Department of Physiology, Brody School of Medicine, East Carolina University, Greenville, North Carolina 27834, USA
13East Carolina Diabetes and Obesity Institute, East Carolina University, Greenville, North Carolina 27834, USA
14UNC Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, North Carolina 27599, USA
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Christian Frezza
2MRC Cancer Unit, University of Cambridge, Cambridge Biomedical Campus, Cambridge CB2 0XZ, UK
3CECAD Research Center, Faculty of Medicine, University Hospital Cologne, Cologne 50931, Germany
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Antonio Vidal-Puig
1Metabolic Research Laboratories, Wellcome-Medical Research Council Institute of Metabolic Science, University of Cambridge, Cambridge CB2 0QQ, UK
10Centro de Investigacion Principe Felipe, Valencia 46012, Spain
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  • For correspondence: djf72@medschl.cam.ac.uk ajv22@medschl.cam.ac.uk sv234@medschl.cam.ac.uk
Daniel J. Fazakerley
1Metabolic Research Laboratories, Wellcome-Medical Research Council Institute of Metabolic Science, University of Cambridge, Cambridge CB2 0QQ, UK
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  • For correspondence: djf72@medschl.cam.ac.uk ajv22@medschl.cam.ac.uk sv234@medschl.cam.ac.uk
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SUMMARY

Cell culture, the workhorse of biomedical research, is generally considered to be hyperoxic. However, oxygen consumption by cells is underappreciated. High cellular respiration rates can rapidly deplete oxygen, resulting in local hypoxia. Increasing pericellular oxygen levels rewired the metabolism of multiple post-mitotic cell-lines, both in monolayer and organoid culture. Under standard conditions, cultured adipocytes are hypoxic and highly glycolytic. Increased oxygen availability diverted glucose flux toward mitochondria and increased lipogenesis from glucose-derived carbon. These metabolic changes were coupled to thousands of gene expression changes, and rendered adipocytes more sensitive to insulin and lipolytic stimuli. Importantly, pathway analyses revealed increasing oxygen tension made in vitro adipocytes more similar to in vivo adipose tissue. hPSC-derived hepatocytes and cardiac organoids were also functionally enhanced by increased oxygen. Our findings suggest that oxygen is limiting in many standard cell culture systems, and highlight how controlling oxygen availability can improve translatability of cell models.

Competing Interest Statement

The authors have declared no competing interest.

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Oxygen is a critical regulator of cellular metabolism and function in cell culture
Joycelyn Tan, Sam Virtue, Dougall M. Norris, Olivia J. Conway, Ming Yang, Christopher Gribben, Fatima Lugtu, James R. Krycer, Richard J. Mills, Ioannis Kamzolas, Conceição Pereira, Martin Dale, Amber S. Shun-Shion, Harry J. M. Baird, James A. Horscroft, Alice P. Sowton, Marcella Ma, Stefania Carobbio, Evangelia Petsalaki, Andrew J. Murray, David C. Gershlick, James E. Hudson, Ludovic Vallier, Kelsey H. Fisher-Wellman, Christian Frezza, Antonio Vidal-Puig, Daniel J. Fazakerley
bioRxiv 2022.11.29.516437; doi: https://doi.org/10.1101/2022.11.29.516437
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Oxygen is a critical regulator of cellular metabolism and function in cell culture
Joycelyn Tan, Sam Virtue, Dougall M. Norris, Olivia J. Conway, Ming Yang, Christopher Gribben, Fatima Lugtu, James R. Krycer, Richard J. Mills, Ioannis Kamzolas, Conceição Pereira, Martin Dale, Amber S. Shun-Shion, Harry J. M. Baird, James A. Horscroft, Alice P. Sowton, Marcella Ma, Stefania Carobbio, Evangelia Petsalaki, Andrew J. Murray, David C. Gershlick, James E. Hudson, Ludovic Vallier, Kelsey H. Fisher-Wellman, Christian Frezza, Antonio Vidal-Puig, Daniel J. Fazakerley
bioRxiv 2022.11.29.516437; doi: https://doi.org/10.1101/2022.11.29.516437

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