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PTEN deficiency exposes a requirement for an ARF GTPase module in integrin-dependent invasion in ovarian cancer

View ORCID ProfileKonstantina Nikolatou, View ORCID ProfileEmma Sandilands, View ORCID ProfileAlvaro Román-Fernández, View ORCID ProfileErin M. Cumming, View ORCID ProfileEva Freckmann, View ORCID ProfileSergio Lilla, View ORCID ProfileLori Buetow, Lynn McGarry, Matthew Neilson, Robin Shaw, View ORCID ProfileDavid Strachan, View ORCID ProfileCrispin Miller, View ORCID ProfileDanny T. Huang, View ORCID ProfileIain A. McNeish, James C. Norman, View ORCID ProfileSara Zanivan, View ORCID ProfileDavid M. Bryant
doi: https://doi.org/10.1101/2022.11.29.518198
Konstantina Nikolatou
1School of Cancer Sciences, University of Glasgow, Glasgow, G61 1HQ, United Kingdom.
2The CRUK Beatson Institute, Glasgow, G61 1BD, United Kingdom.
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  • ORCID record for Konstantina Nikolatou
Emma Sandilands
1School of Cancer Sciences, University of Glasgow, Glasgow, G61 1HQ, United Kingdom.
2The CRUK Beatson Institute, Glasgow, G61 1BD, United Kingdom.
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Alvaro Román-Fernández
1School of Cancer Sciences, University of Glasgow, Glasgow, G61 1HQ, United Kingdom.
2The CRUK Beatson Institute, Glasgow, G61 1BD, United Kingdom.
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Erin M. Cumming
1School of Cancer Sciences, University of Glasgow, Glasgow, G61 1HQ, United Kingdom.
2The CRUK Beatson Institute, Glasgow, G61 1BD, United Kingdom.
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Eva Freckmann
1School of Cancer Sciences, University of Glasgow, Glasgow, G61 1HQ, United Kingdom.
2The CRUK Beatson Institute, Glasgow, G61 1BD, United Kingdom.
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Sergio Lilla
2The CRUK Beatson Institute, Glasgow, G61 1BD, United Kingdom.
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Lori Buetow
2The CRUK Beatson Institute, Glasgow, G61 1BD, United Kingdom.
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Lynn McGarry
2The CRUK Beatson Institute, Glasgow, G61 1BD, United Kingdom.
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Matthew Neilson
2The CRUK Beatson Institute, Glasgow, G61 1BD, United Kingdom.
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Robin Shaw
2The CRUK Beatson Institute, Glasgow, G61 1BD, United Kingdom.
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David Strachan
2The CRUK Beatson Institute, Glasgow, G61 1BD, United Kingdom.
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Crispin Miller
2The CRUK Beatson Institute, Glasgow, G61 1BD, United Kingdom.
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Danny T. Huang
1School of Cancer Sciences, University of Glasgow, Glasgow, G61 1HQ, United Kingdom.
2The CRUK Beatson Institute, Glasgow, G61 1BD, United Kingdom.
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Iain A. McNeish
3Department of Surgery and Cancer, Ovarian Cancer Action Research Centre, Imperial College London, London, United Kingdom.
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James C. Norman
1School of Cancer Sciences, University of Glasgow, Glasgow, G61 1HQ, United Kingdom.
2The CRUK Beatson Institute, Glasgow, G61 1BD, United Kingdom.
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Sara Zanivan
1School of Cancer Sciences, University of Glasgow, Glasgow, G61 1HQ, United Kingdom.
2The CRUK Beatson Institute, Glasgow, G61 1BD, United Kingdom.
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David M. Bryant
1School of Cancer Sciences, University of Glasgow, Glasgow, G61 1HQ, United Kingdom.
2The CRUK Beatson Institute, Glasgow, G61 1BD, United Kingdom.
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  • For correspondence: david.bryant@glasgow.ac.uk
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Abstract

Dysregulation of the PI3K/AKT pathway is a common occurrence in ovarian carcinomas. Loss of the tumour suppressor PTEN in high-grade serous ovarian carcinoma (HGSOC) is associated with a patient subgroup with poor prognosis. The cellular mechanisms of how PTEN loss contributes to HGSOC are largely unknown. We utilise long-term time-lapse imaging of HGSOC spheroids coupled to a machine learning approach to classify the phenotype of PTEN loss. PTEN deficiency does not affect proliferation but rather induces PI(3,4,5)P3-rich and -dependent membrane protrusions into the extracellular matrix (ECM), resulting in a collective invasion phenotype. We identify the small GTPase ARF6 as a crucial vulnerability upon PTEN loss. Through a functional proteomic CRISPR screen of ARF6 interactors, we identify the ARF GTPase-activating protein (GAP) AGAP1 and the ECM receptor β1-integrin (ITGB1) as key ARF6 interactors regulating the PTEN loss-associated invasion phenotype. ARF6 functions to promote invasion by controlling the recycling of internalised, active β1-integrin complexes to maintain invasive activity into the ECM. The expression of the ARF6-centred complex in HGSOC patients is inversely associated with outcome, allowing identification of patient groups with improved versus poor outcome. ARF6 may represent a new therapeutic vulnerability in PTEN- depleted HGSOC tumours.

Competing Interest Statement

E.C.F. was supported by a University of Glasgow Industrial Partnership Ph.D. scheme co-funded by Essen Bioscience, Sartorius Group. All other authors have no competing interests.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted November 29, 2022.
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PTEN deficiency exposes a requirement for an ARF GTPase module in integrin-dependent invasion in ovarian cancer
Konstantina Nikolatou, Emma Sandilands, Alvaro Román-Fernández, Erin M. Cumming, Eva Freckmann, Sergio Lilla, Lori Buetow, Lynn McGarry, Matthew Neilson, Robin Shaw, David Strachan, Crispin Miller, Danny T. Huang, Iain A. McNeish, James C. Norman, Sara Zanivan, David M. Bryant
bioRxiv 2022.11.29.518198; doi: https://doi.org/10.1101/2022.11.29.518198
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PTEN deficiency exposes a requirement for an ARF GTPase module in integrin-dependent invasion in ovarian cancer
Konstantina Nikolatou, Emma Sandilands, Alvaro Román-Fernández, Erin M. Cumming, Eva Freckmann, Sergio Lilla, Lori Buetow, Lynn McGarry, Matthew Neilson, Robin Shaw, David Strachan, Crispin Miller, Danny T. Huang, Iain A. McNeish, James C. Norman, Sara Zanivan, David M. Bryant
bioRxiv 2022.11.29.518198; doi: https://doi.org/10.1101/2022.11.29.518198

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