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ApoE isoforms differentially regulate neuronal membrane proteasomes to shift the threshold for pathological aggregation of endogenous Tau

V Paradise, M Sabu, J Bafia, NA Sharif, C Nguyen, Mukim R Dhanraj, X Wang, J Fu, J Ndubisi, G Maldonado, M Strickland, H Figueroa, D Almeida, B Hyman, DM Holtzman, T Nuriel, KV Ramachandran
doi: https://doi.org/10.1101/2022.11.29.518293
V Paradise
1Taub Institute for Research on Alzheimer’s Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, Taub Institute for Research on Alzheimers Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032
2Department of Neurology, Columbia University Irving Medical Center. New York, NY 10032
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M Sabu
1Taub Institute for Research on Alzheimer’s Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, Taub Institute for Research on Alzheimers Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032
2Department of Neurology, Columbia University Irving Medical Center. New York, NY 10032
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J Bafia
3Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02139
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NA Sharif
1Taub Institute for Research on Alzheimer’s Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, Taub Institute for Research on Alzheimers Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032
2Department of Neurology, Columbia University Irving Medical Center. New York, NY 10032
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C Nguyen
1Taub Institute for Research on Alzheimer’s Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, Taub Institute for Research on Alzheimers Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032
2Department of Neurology, Columbia University Irving Medical Center. New York, NY 10032
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Mukim R Dhanraj
1Taub Institute for Research on Alzheimer’s Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, Taub Institute for Research on Alzheimers Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032
2Department of Neurology, Columbia University Irving Medical Center. New York, NY 10032
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X Wang
1Taub Institute for Research on Alzheimer’s Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, Taub Institute for Research on Alzheimers Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032
2Department of Neurology, Columbia University Irving Medical Center. New York, NY 10032
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J Fu
4Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA
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J Ndubisi
1Taub Institute for Research on Alzheimer’s Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, Taub Institute for Research on Alzheimers Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032
2Department of Neurology, Columbia University Irving Medical Center. New York, NY 10032
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G Maldonado
1Taub Institute for Research on Alzheimer’s Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, Taub Institute for Research on Alzheimers Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032
2Department of Neurology, Columbia University Irving Medical Center. New York, NY 10032
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M Strickland
5Department of Neurology, Developmental Biology, Hope Center for Neurological Disorders, Alzheimers Disease Research Center, Washington University School of Medicine, St. Louis, MO 63110
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H Figueroa
1Taub Institute for Research on Alzheimer’s Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, Taub Institute for Research on Alzheimers Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032
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D Almeida
1Taub Institute for Research on Alzheimer’s Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, Taub Institute for Research on Alzheimers Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032
2Department of Neurology, Columbia University Irving Medical Center. New York, NY 10032
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B Hyman
6Alzheimer Research Unit of the MassGeneral Institute for Neurodegenerative Disease, Department of Neurology of the Massachusetts General Hospital, and Harvard Medical School, Charlestown, Massachusetts 02129-4404
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DM Holtzman
5Department of Neurology, Developmental Biology, Hope Center for Neurological Disorders, Alzheimers Disease Research Center, Washington University School of Medicine, St. Louis, MO 63110
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T Nuriel
1Taub Institute for Research on Alzheimer’s Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, Taub Institute for Research on Alzheimers Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032
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KV Ramachandran
1Taub Institute for Research on Alzheimer’s Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, Taub Institute for Research on Alzheimers Disease and the Aging Brain, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032
2Department of Neurology, Columbia University Irving Medical Center. New York, NY 10032
7Department of Neuroscience, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032
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  • For correspondence: kvr2113@cumc.columbia.edu
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Abstract

Neuronal membrane proteasomes (NMPs) are a functionally transmembrane subset of 20S proteasomes that degrade newly synthesized proteins. To date, the molecular composition of NMPs is undefined, and moreover, whether NMPs can influence any aspect of protein aggregation with relevance to neurodegenerative disorders remains unexplored. Using a Cre-dependent conditional knock-in mouse line to endogenously tag the proteasome, we find that NMPs co-purify with ApoE. We discover that NMP membrane localization is differentially modulated by ApoE isoforms (E4<E3<E2) in vitro, in vivo, and in human postmortem samples. This isoform-dependent change in NMP localization inversely correlates with the risk that ApoE isoforms pose for Alzheimer’s Disease. ApoE4-dependent reduction of NMP localization is strongest in brain regions selectively vulnerable to neurodegeneration. We synthesized selective NMP-specific inhibitors and discovered that NMP inhibition induces aggregation of endogenous and newly synthesized mouse and human Tau isoforms, without the need for seeding or pathogenic mutations. We posit that newly synthesized Tau is exceptionally susceptible to aggregation due to NMP dysfunction. Stereotactic injection of NMP inhibitors in vivo induces aggregation, phosphorylation, somatodendritic mislocalization and pathology of endogenous newly synthesized Tau. Finally, using ApoE-KI/hTau-KI crosses, we find that ApoE isoforms differentially shift the aggregation threshold for Tau. Overall, our data define NMPs as a pivotal proteostasis mechanism underlying the formation of endogenous Tau aggregates, which is directly regulated by the largest genetic risk factor for late-onset Alzheimer’s Disease.

Competing Interest Statement

KVR received funding from Eli Lilly.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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ApoE isoforms differentially regulate neuronal membrane proteasomes to shift the threshold for pathological aggregation of endogenous Tau
V Paradise, M Sabu, J Bafia, NA Sharif, C Nguyen, Mukim R Dhanraj, X Wang, J Fu, J Ndubisi, G Maldonado, M Strickland, H Figueroa, D Almeida, B Hyman, DM Holtzman, T Nuriel, KV Ramachandran
bioRxiv 2022.11.29.518293; doi: https://doi.org/10.1101/2022.11.29.518293
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ApoE isoforms differentially regulate neuronal membrane proteasomes to shift the threshold for pathological aggregation of endogenous Tau
V Paradise, M Sabu, J Bafia, NA Sharif, C Nguyen, Mukim R Dhanraj, X Wang, J Fu, J Ndubisi, G Maldonado, M Strickland, H Figueroa, D Almeida, B Hyman, DM Holtzman, T Nuriel, KV Ramachandran
bioRxiv 2022.11.29.518293; doi: https://doi.org/10.1101/2022.11.29.518293

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