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Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis

View ORCID ProfileCédric Hubas, Julie Gaubert-Boussarie, View ORCID ProfileAn-Sofie D’Hondt, View ORCID ProfileBruno Jesus, Dominique Lamy, View ORCID ProfileVona Meleder, Antoine Prins, View ORCID ProfilePhilippe Rosa, View ORCID ProfileWillem Stock, View ORCID ProfileKoen Sabbe
doi: https://doi.org/10.1101/2022.12.02.516908
Cédric Hubas
1Laboratoire de Biologie des Organismes et Ecosystèmes Aquatiques (BOREA) Museum National d’Histoire Naturelle, CNRS, Sorbonne Université, IRD, Université des Antilles, Université de Caen Normandie; Station Marine de Concarneau, Place de la croix,29900, Concarneau, France
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  • For correspondence: cedric.hubas@mnhn.fr
Julie Gaubert-Boussarie
1Laboratoire de Biologie des Organismes et Ecosystèmes Aquatiques (BOREA) Museum National d’Histoire Naturelle, CNRS, Sorbonne Université, IRD, Université des Antilles, Université de Caen Normandie; Station Marine de Concarneau, Place de la croix,29900, Concarneau, France
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An-Sofie D’Hondt
2Department of Biology, Research Group Protistology and Aquatic Ecology, Ghent University, Krijgslaan 281/S8, 9000, Belgium
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Bruno Jesus
3Nantes Université, Institut des Substances et Organismes de la Mer, ISOMer, UR 2160, F-44000 Nantes, France
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Dominique Lamy
4Laboratoire de Biologie des Organismes et Ecosystèmes Aquatiques (BOREA) Muséum National d’Histoire Naturelle, CNRS, Sorbonne Université, IRD, Université des Antilles, Université de Caen Normandie; Jardin des plantes, Bâtiment arthropodes, Paris, France
5Institute of Ecology and Environmental Sciences of Paris (iEES-Paris), Sorbonne Université, Univ Paris Est Créteil, IRD, CNRS, INRA, 4 place Jussieu, 75005 Paris, France
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Vona Meleder
3Nantes Université, Institut des Substances et Organismes de la Mer, ISOMer, UR 2160, F-44000 Nantes, France
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Antoine Prins
1Laboratoire de Biologie des Organismes et Ecosystèmes Aquatiques (BOREA) Museum National d’Histoire Naturelle, CNRS, Sorbonne Université, IRD, Université des Antilles, Université de Caen Normandie; Station Marine de Concarneau, Place de la croix,29900, Concarneau, France
3Nantes Université, Institut des Substances et Organismes de la Mer, ISOMer, UR 2160, F-44000 Nantes, France
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Philippe Rosa
3Nantes Université, Institut des Substances et Organismes de la Mer, ISOMer, UR 2160, F-44000 Nantes, France
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Willem Stock
2Department of Biology, Research Group Protistology and Aquatic Ecology, Ghent University, Krijgslaan 281/S8, 9000, Belgium
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Koen Sabbe
2Department of Biology, Research Group Protistology and Aquatic Ecology, Ghent University, Krijgslaan 281/S8, 9000, Belgium
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Abstract

Extracellular polymeric substances (EPS) refer to a wide variety of high molecular weight molecules secreted outside the cell membrane by biofilm microorganisms. In the present study, EPS from marine microphytobenthic biofilms were extracted and their isotope ratios were analysed. A comparison of these ratios with the carbon isotope ratios of fatty acid biomarkers allowed the identification of the main EPS producers of two contrasting types of intertidal marine sediments. Our study reveals that EPS production and degradation are supported by very different communities in muddy and sandy sediments and that EPS sources are more diverse in the sand. In mud, bound EPS are mainly derived from diatoms, while colloidal EPS are the result of degradation of bound exopolymers by certain specialised bacteria. In sand, bound EPS are rather of bacterial or cyanobacterial origin and diatoms contribute mainly to colloidal EPS. These differences are thought to be related to differences in the functioning of the epipelic and epipsammic communities and in particular to the use of EPS either for motility or for cell attachment purposes.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • https://doi.org/10.5281/zenodo.7351530

  • https://doi.org/10.5281/zenodo.7387066

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted December 03, 2022.
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Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis
Cédric Hubas, Julie Gaubert-Boussarie, An-Sofie D’Hondt, Bruno Jesus, Dominique Lamy, Vona Meleder, Antoine Prins, Philippe Rosa, Willem Stock, Koen Sabbe
bioRxiv 2022.12.02.516908; doi: https://doi.org/10.1101/2022.12.02.516908
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Identification of microbial exopolymer producers in sandy and muddy intertidal sediments by compound-specific isotope analysis
Cédric Hubas, Julie Gaubert-Boussarie, An-Sofie D’Hondt, Bruno Jesus, Dominique Lamy, Vona Meleder, Antoine Prins, Philippe Rosa, Willem Stock, Koen Sabbe
bioRxiv 2022.12.02.516908; doi: https://doi.org/10.1101/2022.12.02.516908

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