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Transcriptional profiling of rare acantholytic disorders suggests common mechanisms of pathogenesis

View ORCID ProfileQuinn R. Roth-Carter, View ORCID ProfileHope E. Burks, View ORCID ProfileZiyou Ren, View ORCID ProfileJennifer L. Koetsier, View ORCID ProfileLam C. Tsoi, View ORCID ProfilePaul Harms, Xianying Xing, View ORCID ProfileJoseph Kirma, View ORCID ProfileRobert M. Harmon, View ORCID ProfileLisa M. Godsel, View ORCID ProfileAbbey L. Perl, View ORCID ProfileJohann E. Gudjonsson, View ORCID ProfileKathleen J. Green
doi: https://doi.org/10.1101/2022.12.02.518412
Quinn R. Roth-Carter
1Department of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois
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  • ORCID record for Quinn R. Roth-Carter
Hope E. Burks
1Department of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois
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Ziyou Ren
2Department of Dermatology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois
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  • ORCID record for Ziyou Ren
Jennifer L. Koetsier
1Department of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois
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Lam C. Tsoi
3Department of Dermatology, University of Michigan, Ann Arbor, Michigan
4Department of Computational Medicine & Bioinformatics, University of Michigan, Ann Arbor, Michigan
5Department of Biostatistics, University of Michigan, Ann Arbor, Michigan
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Paul Harms
3Department of Dermatology, University of Michigan, Ann Arbor, Michigan
6Department of Pathology, University of Michigan, Ann Arbor, Michigan
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Xianying Xing
3Department of Dermatology, University of Michigan, Ann Arbor, Michigan
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Joseph Kirma
3Department of Dermatology, University of Michigan, Ann Arbor, Michigan
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  • ORCID record for Joseph Kirma
Robert M. Harmon
1Department of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois
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Lisa M. Godsel
1Department of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois
2Department of Dermatology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois
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Abbey L. Perl
1Department of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois
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Johann E. Gudjonsson
3Department of Dermatology, University of Michigan, Ann Arbor, Michigan
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Kathleen J. Green
1Department of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois
2Department of Dermatology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois
7Robert H. Lurie Comprehensive Cancer Center, Northwestern University, Chicago, Illinois
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  • For correspondence: kgreen@northwestern.edu
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Abstract

Background Darier, Hailey-Hailey, and Grover’s diseases are rare non-autoimmune acantholytic skin diseases. While these diseases have different underlying causes, they share defects in cell-cell adhesion in the epidermis and desmosome organization.

Objective To better understand the underlying mechanisms leading to disease in these conditions we performed RNA-seq on lesional skin samples from Darier, Hailey-Hailey, and Grover’s disease patients.

Methods RNA-seq and bioinformatics analyses were performed on banked paraffin embedded diagnostic samples from each disease. For detailed Methods, please see the Methods section in this article’s Online Repository at www.jacionline.org.

Results The transcriptomic profiles of Darier, Hailey-Hailey, and Grover’s disease were found to share a remarkable overlap, which did not extend to other common inflammatory skin diseases, psoriasis and atopic dermatitis. Analysis of enriched pathways showed a shared upregulation in keratinocyte differentiation and Th17 inflammatory pathways, and a decrease in cell adhesion and actin organization pathways in Darier, Hailey-Hailey, and Grover’s disease. Direct comparison to atopic dermatitis and psoriasis showed that the downregulation in actin organization pathways was a unique feature in Darier, Hailey-Hailey, and Grover’s disease.

Further, upstream regulator analysis suggests that a decrease in SRF/MRTF activity may be responsible for the downregulation of actin organization pathways. Staining for MRTFA in lesional skin samples showed a decrease in nuclear MRTFA in patient skin compared to normal skin.

Conclusion These findings highlight the significant level of similarity in the transcriptome of Darier, Hailey-Hailey, and Grover’s disease, and identify decreases in actin organization pathways as a unique signature present in these conditions.

Key Messages

  • Darier Disease, Hailey-Hailey Disease, and Grover’s Disease share similar transcriptional profiles suggesting common mechanisms of pathogenesis.

  • SRF/MRTFA activity is reduced in Darier Disease, Hailey-Hailey Disease and Grover’s disease, implicating actin organization in acantholysis.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • The authors declare that no conflict of interest exists

  • Funding: This work was supported by the National Institutes of Health/National Institute of Arthritis and Musculoskeletal and Skin Diseases R01AR041836 and R01AR043380 to KJG, F32AR078645 to QRRC. ALP was supported by T32AR060710. LCT, JK, XX, PH, and JEG were supported by P30 AR075043. Histology services were provided by the Northwestern University Pathology Core supported by P30CA060553 awarded to the Robert H Lurie Comprehensive Cancer Center. This work was also supported by a generous donation from the Lee family. Further support was provided by the JL Mayberry endowment to KJG.

  • Abbreviations

    AD
    Atopic Dermatitis
    DD
    Darier Disease
    ELK1
    ETS transcription factor ELK1
    ELK3
    ETS transcription factor ELK3
    ELK4
    ETS transcription factor ELK4
    HHD
    Hailey-Hailey Disease
    IPA
    Ingenuity Pathway Analysis
    GD
    Grover’s Disease
    GSEA
    Gene Set Enrichment Analysis
    MRTFA
    Myocardin-related transcription factor A
    MRTFB
    Myocardin-related transcription factor B
    PCA
    Principle Component Analysis
    PSO
    Psoriasis
    SRF
    Serum response factor
    TAZ
    transcriptional coactivator with PDZ-binding motif
    YAP
    Yes-associated protein
  • Copyright 
    The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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    Transcriptional profiling of rare acantholytic disorders suggests common mechanisms of pathogenesis
    Quinn R. Roth-Carter, Hope E. Burks, Ziyou Ren, Jennifer L. Koetsier, Lam C. Tsoi, Paul Harms, Xianying Xing, Joseph Kirma, Robert M. Harmon, Lisa M. Godsel, Abbey L. Perl, Johann E. Gudjonsson, Kathleen J. Green
    bioRxiv 2022.12.02.518412; doi: https://doi.org/10.1101/2022.12.02.518412
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    Transcriptional profiling of rare acantholytic disorders suggests common mechanisms of pathogenesis
    Quinn R. Roth-Carter, Hope E. Burks, Ziyou Ren, Jennifer L. Koetsier, Lam C. Tsoi, Paul Harms, Xianying Xing, Joseph Kirma, Robert M. Harmon, Lisa M. Godsel, Abbey L. Perl, Johann E. Gudjonsson, Kathleen J. Green
    bioRxiv 2022.12.02.518412; doi: https://doi.org/10.1101/2022.12.02.518412

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