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Ring-finger protein 34 facilitates nervous necrosis virus evading antiviral innate immunity by targeting TBK1 and IRF3 for ubiquitination and degradation

Wanwan Zhang, Leshi Chen, Lan Yao, Peng Jia, Yangxi Xiang, Meisheng Yi, Kuntong Jia
doi: https://doi.org/10.1101/2022.12.05.519093
Wanwan Zhang
1School of Marine Sciences, Sun Yat-sen University, Guangzhou 510000, China
3Guangdong Provincial Key Laboratory of Marine Resources and Coastal Engineering, Guangzhou 510000, China
4Pearl River Estuary Marine Ecosystem Research Station, Ministry of Education, Zhuhai 519000, China
5Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519000, China
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Leshi Chen
1School of Marine Sciences, Sun Yat-sen University, Guangzhou 510000, China
3Guangdong Provincial Key Laboratory of Marine Resources and Coastal Engineering, Guangzhou 510000, China
4Pearl River Estuary Marine Ecosystem Research Station, Ministry of Education, Zhuhai 519000, China
5Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519000, China
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Lan Yao
1School of Marine Sciences, Sun Yat-sen University, Guangzhou 510000, China
3Guangdong Provincial Key Laboratory of Marine Resources and Coastal Engineering, Guangzhou 510000, China
4Pearl River Estuary Marine Ecosystem Research Station, Ministry of Education, Zhuhai 519000, China
5Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519000, China
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Peng Jia
1School of Marine Sciences, Sun Yat-sen University, Guangzhou 510000, China
2Fuzhou Medical University, Jiangxi, Fuzhou 344000, China
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Yangxi Xiang
1School of Marine Sciences, Sun Yat-sen University, Guangzhou 510000, China
6State Key Laboratory for Quality and Safety of Agro-products, Ningbo University, Ningbo 315000, China
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Meisheng Yi
1School of Marine Sciences, Sun Yat-sen University, Guangzhou 510000, China
3Guangdong Provincial Key Laboratory of Marine Resources and Coastal Engineering, Guangzhou 510000, China
4Pearl River Estuary Marine Ecosystem Research Station, Ministry of Education, Zhuhai 519000, China
5Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519000, China
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  • For correspondence: yimsh@mail.sysu.edu.cn jiakt3@mail.sysu.edu.cn
Kuntong Jia
1School of Marine Sciences, Sun Yat-sen University, Guangzhou 510000, China
3Guangdong Provincial Key Laboratory of Marine Resources and Coastal Engineering, Guangzhou 510000, China
4Pearl River Estuary Marine Ecosystem Research Station, Ministry of Education, Zhuhai 519000, China
5Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519000, China
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  • For correspondence: yimsh@mail.sysu.edu.cn jiakt3@mail.sysu.edu.cn
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Abstract

Ubiquitination, as one of the most prevalent posttranslational modifications of proteins, enables a tight control on host immune responses. Many viruses hijack the host ubiquitin system to regulate host antiviral responses for their survival. Here, we found that fish pathogen nervous necrosis virus (NNV) recruited an E3 ubiquitin ligase ring finger protein 34 (RNF34) to inhibit RLRs-mediated interferons (IFN) response via ubiquitinating TBK1 and IRF3. Ectopic expression of RNF34 greatly enhances NNV replication and prevents IFN production, while deficiency of RNF34 led to the opposite effect. Furthermore, RNF34 targets TBK1 and IRF3 via its RING domain. Of note, the interactions between RNF34 and TBK1 or IRF3 were conserved in different fish species. Mechanically, RNF34 promote K27-linked ubiquitination and degradation of TBK1 and IRF3, which in turn diminishing TBK1-induced translocation of IRF3 from cytoplasm to nucleus. Ultimately, NNV capsid protein (CP) was found directly bind with RNF34 and this interaction was conserved in different fishes, and CP induced TBK1 and IRF3 degradation and IFN suppression was depended on RNF34. Our finding demonstrated a novel mechanism by which NNV CP evaded host innate immunity via RNF34, and provided a potential drug target for the control of NNV infection.

Author Summary Ubiquitination plays an essential role in the regulation of innate immune responses to pathogens. NNV, a kind of RNA virus, is the causal agent of a highly destructive disease in a variety of marine and freshwater fish. Previous study reported NNV could hijack the ubiquitin system to manipulate the host’s immune responses, however, how NNV utilizes ubiquitination to facilitate its own replication is not well understood. Here, we identified a novel distinct role of E3 ubiquitin ligase RNF34 as an IFN antagonist to promote NNV infection. Nervous necrosis virus capsid protein utilized RNF34 to target TBK1 and IRF3 for K27 and K48-linked ubiquitination degradation. Importantly, the interactions between RNF34 and CP, TBK1 or IRF3 are conserved in different fishes, suggesting it is a general immune evasion strategy exploited by NNV to target the IFN response via RNF34.

Competing Interest Statement

The authors have declared no competing interest.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted December 05, 2022.
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Ring-finger protein 34 facilitates nervous necrosis virus evading antiviral innate immunity by targeting TBK1 and IRF3 for ubiquitination and degradation
Wanwan Zhang, Leshi Chen, Lan Yao, Peng Jia, Yangxi Xiang, Meisheng Yi, Kuntong Jia
bioRxiv 2022.12.05.519093; doi: https://doi.org/10.1101/2022.12.05.519093
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Ring-finger protein 34 facilitates nervous necrosis virus evading antiviral innate immunity by targeting TBK1 and IRF3 for ubiquitination and degradation
Wanwan Zhang, Leshi Chen, Lan Yao, Peng Jia, Yangxi Xiang, Meisheng Yi, Kuntong Jia
bioRxiv 2022.12.05.519093; doi: https://doi.org/10.1101/2022.12.05.519093

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