Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Predicting distributed working memory activity in a large-scale mouse brain: the importance of the cell type-specific connectome

View ORCID ProfileXingyu Ding, View ORCID ProfileSean Froudist-Walsh, View ORCID ProfileJorge Jaramillo, Junjie Jiang, View ORCID ProfileXiao-Jing Wang
doi: https://doi.org/10.1101/2022.12.05.519094
Xingyu Ding
1Center for Neural Science, New York University, New York, NY 10003, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Xingyu Ding
Sean Froudist-Walsh
1Center for Neural Science, New York University, New York, NY 10003, USA
2Computational Neuroscience Unit, Faculty of Engineering, University of Bristol, Bristol BS8 1UB, UK
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Sean Froudist-Walsh
Jorge Jaramillo
1Center for Neural Science, New York University, New York, NY 10003, USA
3Campus Institute for Dynamics of Biological Networks, Goettingen, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Jorge Jaramillo
Junjie Jiang
1Center for Neural Science, New York University, New York, NY 10003, USA
4The Key Laboratory of Biomedical Information Engineering of Ministry of Education,Institute of Health and Rehabilitation Science,School of Life Science and Technology, Research Center for Brain-inspired Intelligence, Xi’an Jiaotong University, No.28, West Xianning Road, Xi’an, 710049, Shaanxi, P. R. China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Xiao-Jing Wang
1Center for Neural Science, New York University, New York, NY 10003, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Xiao-Jing Wang
  • For correspondence: [email protected]
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Preview PDF
Loading

Abstract

Recent advances in connectomic and neurophysiological tools make it possible to probe whole-brain mechanisms in the mouse that underlie cognition and behavior. Based on experimental data, we developed a large-scale model of the mouse brain for a cardinal cognitive function called working memory, the brain’s ability to internally hold and process information without sensory input. In the model, interregional connectivity is constrained by mesoscopic connectome data. The density of parvalbumin-expressing interneurons in the model varies systematically across the cortex. We found that the long-range cell type-specific targeting and density of cell classes define working memory representations. A core cortical subnetwork and the thalamus produce distributed persistent activity, and the network exhibits numerous attractor states. Novel cell type-specific graph theory measures predicted the activity patterns and core subnetwork. This work highlights the need for cell type-specific connectomics, and provides a theory and tools to interpret large-scale recordings of brain activity during cognition.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • ↵* co-first authors

  • ↵+ lead contact: xjwang{at}nyu.edu

  • methods of hierarchy calculation revised simulation parameters revised

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Back to top
PreviousNext
Posted March 13, 2023.
Download PDF
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Predicting distributed working memory activity in a large-scale mouse brain: the importance of the cell type-specific connectome
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Predicting distributed working memory activity in a large-scale mouse brain: the importance of the cell type-specific connectome
Xingyu Ding, Sean Froudist-Walsh, Jorge Jaramillo, Junjie Jiang, Xiao-Jing Wang
bioRxiv 2022.12.05.519094; doi: https://doi.org/10.1101/2022.12.05.519094
Twitter logo Facebook logo LinkedIn logo Mendeley logo
Citation Tools
Predicting distributed working memory activity in a large-scale mouse brain: the importance of the cell type-specific connectome
Xingyu Ding, Sean Froudist-Walsh, Jorge Jaramillo, Junjie Jiang, Xiao-Jing Wang
bioRxiv 2022.12.05.519094; doi: https://doi.org/10.1101/2022.12.05.519094

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Neuroscience
Subject Areas
All Articles
  • Animal Behavior and Cognition (6024)
  • Biochemistry (13708)
  • Bioengineering (10437)
  • Bioinformatics (33163)
  • Biophysics (17112)
  • Cancer Biology (14180)
  • Cell Biology (20108)
  • Clinical Trials (138)
  • Developmental Biology (10868)
  • Ecology (16022)
  • Epidemiology (2067)
  • Evolutionary Biology (20348)
  • Genetics (13398)
  • Genomics (18634)
  • Immunology (13754)
  • Microbiology (32164)
  • Molecular Biology (13393)
  • Neuroscience (70079)
  • Paleontology (526)
  • Pathology (2191)
  • Pharmacology and Toxicology (3741)
  • Physiology (5866)
  • Plant Biology (12020)
  • Scientific Communication and Education (1814)
  • Synthetic Biology (3367)
  • Systems Biology (8166)
  • Zoology (1842)